Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,993,950 – 19,994,067 |
Length | 117 |
Max. P | 0.592884 |
Location | 19,993,950 – 19,994,067 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.75 |
Mean single sequence MFE | -32.13 |
Consensus MFE | -19.89 |
Energy contribution | -19.87 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.19 |
Mean z-score | -2.17 |
Structure conservation index | 0.62 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.592884 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19993950 117 + 23771897 UAGCUGACAUAUUUCCACACAAUUGGGGAUAAAAAGAGCUCGCCCGAAAUUUAAUUCCGUGCGACUGGCGAAAGCCAAAAA--CC-AAAACGACAAGUGUCGUCUGGCAGUUGUUGCGAG ..(((....(((..(((......)))..))).....)))(((((.(((......))).).)))).((((....))))....--..-....((((((.((((....)))).)))))).... ( -33.90) >DroSec_CAF1 83822 119 + 1 UAGCUGACAUAUUUCCGCACAAUUGGGGAUGAAAAGAGCUCGCCUGAAAUUUAAUUCCGUGCGACUGGCGAAAGCCAAAAACGCC-AAAACGACAAGUGUCGUCUGGCAGUUGUUGCGAG ..(((....(((..(((......)))..))).....)))((((..(((......)))...(((((((((....)))......(((-(..(((((....))))).)))))))))).)))). ( -37.10) >DroSim_CAF1 42561 110 + 1 UAGCUGACAUAUUUCCGCACAAUUGGGGAUGAAAAGAGCUCGCCUGAAAUUUAAUUCCGUGCGACUGGCGAAAGCC----------AAAACGACAAGUGUCGUCUGGCAGUUGUUGCGAG ..(((....(((..(((......)))..))).....)))(((((.(((......))).).)))).((((....)))----------)...((((((.((((....)))).)))))).... ( -32.90) >DroEre_CAF1 34856 105 + 1 UAGCUGACAUAUUUCCACACAAUUGGGGAUA-AAAGACCGCGCUCGAAAUUUAAUUCCGUGCGACUGGCGAAAGCCAAA----CC-AAAACGACAAGUC---CCUGACAGUUGU------ ((((((...(((..(((......)))..)))-...((((((((..(((......))).)))))..((((....))))..----..-..........)))---.....)))))).------ ( -30.30) >DroYak_CAF1 35666 105 + 1 CAGCUGACAUAUUUCCACACAAUUGGGGAUA-AAAGAGCUCGCUCGAAAUUUAAUUCCGUGUGACUGGCGAAAGCCAAA----CC-AAAACGACAAGUG---UCUGACAGUUGG------ ((((((.........(((((....((((.((-((.(((....)))....)))).)))))))))..((((....))))..----..-.....(((....)---))...)))))).------ ( -29.90) >DroAna_CAF1 37008 104 + 1 C-GUCGACAUAUUUCCACACAAUUGGGCCAA--AAACUGGCGCACGAAAUUUAAUUCCAUGUGACUGGCGAAAGCCAAA----CCAAAAACGACAAAUG---UCUGACAGUUGU------ .-((((((((.......((((..((.((((.--....)))).)).(((......)))..))))..((((....))))..----.............)))---)).)))......------ ( -28.70) >consensus UAGCUGACAUAUUUCCACACAAUUGGGGAUA_AAAGAGCUCGCCCGAAAUUUAAUUCCGUGCGACUGGCGAAAGCCAAA____CC_AAAACGACAAGUG___UCUGACAGUUGU______ ((((((.((((((((((......)))))))).........(((..(((......)))...)))..((((....))))...........................)).))))))....... (-19.89 = -19.87 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:07 2006