Locus 7440

Sequence ID 3L_DroMel_CAF1
Location 19,993,122 – 19,993,234
Length 112
Max. P 0.768278
window12087

overview

Window 7

Location 19,993,122 – 19,993,234
Length 112
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 86.43
Mean single sequence MFE -32.87
Consensus MFE -25.52
Energy contribution -24.92
Covariance contribution -0.61
Combinations/Pair 1.26
Mean z-score -2.70
Structure conservation index 0.78
SVM decision value 0.52
SVM RNA-class probability 0.768278
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19993122 112 - 23771897
AAAGUACGCAAAGUUAAUGCUGACCAUGAGCCCCGCU---UUUGAAAGUUUAAGUCUGGCUUUCAAAAACAAGUCACAUGAUUUGGUGUACUUUUGGU-UUUUUCC----GCUUUGACCA
(((((((((.((((((.((.((((...((((...)))---)(((((((((.......)))))))))......)))))))))))).)))))))))((((-(......----.....))))) ( -29.50)
>DroSec_CAF1 83055 111 - 1
AAAGUACGCAAAGUU-GUGCUGACCAUGAGCCCCGCU---UUUGAAAGCUUAAGUCUGGCUUUCAAAAACAAGUCACAUGAUUUGGUGUACUUUUGGU-UGUUUCC----GCUUUGACCA
(((((((((.((((.-.((.((((...((((...)))---)(((((((((.......)))))))))......))))))..)))).)))))))))((((-((.....----....)))))) ( -35.10)
>DroSim_CAF1 41799 112 - 1
AAAGUACGCAAAGUU-GUGCUGACCAUGAGCCCCGCU---UUUGAAAGCUUAAGUCUGGCUUUCAAAAACAAGUCACAUGAUUUGGUGUACUUUUGGUUUAUUUCC----GCUUUGACCA
(((((((((.((((.-.((.((((...((((...)))---)(((((((((.......)))))))))......))))))..)))).)))))))))(((((.......----.....))))) ( -34.80)
>DroEre_CAF1 34063 111 - 1
AAAGUACGCAAACUU-GUGCUGACCAAGAGCCCCGCU---UUUGAAAGUUUAAGUCUGGCUUUCAAAAACAAGUCACAUGAUUUGGUGUACUUUUGGU-UUUUUCC----GCUUUGAUCA
..((((((......)-)))))(((((((((...((((---((((((((((.......))))))))))).((((((....)))))))))..))))))))-)......----.......... ( -31.10)
>DroYak_CAF1 34806 111 - 1
AAAGUACGCAAAGUU-GUGCUGACCAUGAGCCCCGCU---UUUGAAAGUUUAAGUCUGGCUUUCAAAAACAAGUCACAUGACUGGGUGUACUUUUGGU-UUUUCCC----GAUUUGAUCA
.((((((((..(((.-.((.((((...((((...)))---)(((((((((.......)))))))))......))))))..)))..))))))))((((.-.....))----))........ ( -33.40)
>DroAna_CAF1 36228 111 - 1
AAAGUGCUCAGAAGU-GUGGUGACCACGAGCCCCGAUUUUUUUGAAAGU-------UGACUUUCAAAGAAAAGUCACAAGCUCCGGGGUACUUUUGGU-UUUUUCGACAAACUUUCACCA
(((((...(((((((-((((...))))..((((((.((((((((((((.-------...))))))))))))(((.....))).)))))))))))))((-(.....)))..)))))..... ( -33.30)
>consensus
AAAGUACGCAAAGUU_GUGCUGACCAUGAGCCCCGCU___UUUGAAAGUUUAAGUCUGGCUUUCAAAAACAAGUCACAUGAUUUGGUGUACUUUUGGU_UUUUUCC____GCUUUGACCA
(((((((((.(((((.(((.((((....(((...)))...((((((((((.......)))))))))).....)))))))))))).))))))))).......................... (-25.52 = -24.92 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:06 2006