Locus 7439

Sequence ID 3L_DroMel_CAF1
Location 19,989,112 – 19,989,232
Length 120
Max. P 0.880956
window12086

overview

Window 6

Location 19,989,112 – 19,989,232
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.89
Mean single sequence MFE -27.76
Consensus MFE -19.09
Energy contribution -20.25
Covariance contribution 1.16
Combinations/Pair 1.21
Mean z-score -2.35
Structure conservation index 0.69
SVM decision value 0.92
SVM RNA-class probability 0.880956
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19989112 120 - 23771897
ACAUGCAUGGAAAAUACCGUUUCAUUAAAAAGGAGGAAAUAUGUCUGCUGCAGGAAACGCUGGUAAUAAGUAGCUGAAGUAGUUAGUAGUUACAAAGUAAUUCAGCUGAACUUUCACAUG
.....((((((((.(((((((((.......((.(((.......))).))....)))))...)))).....((((((((.((.((.((....)).)).)).))))))))...)))).)))) ( -25.50)
>DroSec_CAF1 79144 113 - 1
ACAUGCAUGGAAAAUAGCAUUUCAUUAAAAAGGAGCAAGGAUGUUUGCUGCAGGAAACGCUGGUAAUAAGUAGCUGAAGUA-------GUUACAAAGUAAUUCAGCUGAACUUUCAUGUG
....((((((((..((((.............(.((((((....)))))).).(....)))))........((((((((.((-------.(.....).)).))))))))...)))))))). ( -29.80)
>DroSim_CAF1 37867 113 - 1
ACAUGCAUGGAAAAUAGCGUUUCAUUAAAAAGGAGCAAGGAUGUUUGCUGCAGGAAACGCUGGUAAUAAGUAGCUGAAGUA-------GUUACAAAGUAAUUCAGCUGAACUUUCAUGUG
....((((((((..(((((((((........(.((((((....)))))).)..)))))))))........((((((((.((-------.(.....).)).))))))))...)))))))). ( -33.20)
>DroEre_CAF1 29555 104 - 1
---------GAAAAAGGCAUUUCAUUACAAAGGAGAAAGUGUAGCUGCUGCAGGAAGUGCUGGUAAUAAGUAGCUGAAGUA-------GUUACAAAGUAAUUCAGUUGAGUUUUCAUGUG
---------(((((.(((.((((........))))....((((((((((.(((....((((.......)))).))).))))-------))))))..........)))...)))))..... ( -22.20)
>DroYak_CAF1 30917 112 - 1
ACAUGCAUGGAAAACAGCAUUUCAUUA-AAAGGAGAAAGAAUUUCUGCUGCAGGCAAUGCUGGUAAUAAGUAGCUAAAGUA-------GUUACAAAGUAAUUCAGUUGAAUUUUCAUGUG
....(((((((((.(((((((.(....-..((.((((.....)))).))....).))))))).......(((((((...))-------))))).................))))))))). ( -28.10)
>consensus
ACAUGCAUGGAAAAUAGCAUUUCAUUAAAAAGGAGAAAGGAUGUCUGCUGCAGGAAACGCUGGUAAUAAGUAGCUGAAGUA_______GUUACAAAGUAAUUCAGCUGAACUUUCAUGUG
....((((((((..(((((((((.......((.((.........)).))....)))))))))........((((((((......................))))))))...)))))))). (-19.09 = -20.25 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:05 2006