| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,987,347 – 19,987,445 |
| Length | 98 |
| Max. P | 0.576227 |
| Location | 19,987,347 – 19,987,445 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.70 |
| Mean single sequence MFE | -26.02 |
| Consensus MFE | -16.22 |
| Energy contribution | -16.30 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.576227 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19987347 98 + 23771897 ------CCUGUUCUCCUGUCUCUCUUCUGUUUGGCUAUGUGCACAACUUUUGGCACGGUCAAAACGCCAAGUAUGAGUGUCAACUGCUGGCCAAGUUCAUAUU----------------U ------.......................((((((((.((((((....((((((...........)))))).....)))).....))))))))))........----------------. ( -18.60) >DroSec_CAF1 77418 83 + 1 ------CCUGUUCUCCU---------------GGCUAUGUACACAGCUUUUGGCACGGUCAAAACGCCAAGUAUGAGUGUCAACUGCUGGCCAAGUUCAUAUU----------------U ------..((..((..(---------------(((........((((..(((((((..(((..((.....)).))))))))))..))))))))))..))....----------------. ( -19.30) >DroSim_CAF1 36168 83 + 1 ------CCUGUUCUCCU---------------GGCUAUGUACACAGCUUUUGGCACGGUCAAAACGGCAAGUAUGAGUGUCAACUGCUGGCCAAGUUCAUAUU----------------U ------..((..((..(---------------(((........((((..(((((((.(((.....)))........)))))))..))))))))))..))....----------------. ( -19.90) >DroEre_CAF1 27850 116 + 1 CUACUUCCUGUUCUCCUGUCUCUCU-UUGUUUGGCUAUGCACACAGCUUUUGGCACGGCCAAAACGUCAAGUAUGAGUGCCAACUGCUGGCCAAGUUCAUACUGGCCAGCCACCACA--- .........((.(((.((.((....-...((((((..(((.((.......)))))..))))))......)))).))).)).....((((((((.((....)))))))))).......--- ( -32.92) >DroYak_CAF1 29172 120 + 1 CUCCUUCCUGUUAGCCUGUCUCUCUCCUGUUUGGCUAUGUACACAGCUUUUGGCACGGCCAAAACGUCAAGUAUGGGUGCCAACUGCUGGCCAAGUUCAUACUGGCCAACCAAUACAUUU ...........(((((...(........)...)))))((((...(((..(((((((..(((..((.....)).))))))))))..)))(((((.((....)))))))......))))... ( -34.00) >DroAna_CAF1 31538 90 + 1 CUGUUUGCUGUUUGCACGGGUGU------UUUGGCGGUGCAAACAGCUUUCGGCACGGCCAAAACGUCAAAGAAGAGUGCCAAAUGCUGGCCAACU------------------------ (((...(((((((((((.(.(..------...).).)))))))))))...)))...(((((..((.((......))))((.....)))))))....------------------------ ( -31.40) >consensus ______CCUGUUCUCCUGUCUCU______UUUGGCUAUGUACACAGCUUUUGGCACGGCCAAAACGUCAAGUAUGAGUGCCAACUGCUGGCCAAGUUCAUAUU________________U ................................(((........((((..(((((((....................)))))))..)))))))............................ (-16.22 = -16.30 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:01 2006