Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,986,749 – 19,986,859 |
Length | 110 |
Max. P | 0.541383 |
Location | 19,986,749 – 19,986,859 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 89.59 |
Mean single sequence MFE | -29.71 |
Consensus MFE | -22.24 |
Energy contribution | -22.56 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.16 |
Mean z-score | -1.56 |
Structure conservation index | 0.75 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541383 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19986749 110 - 23771897 GACGGCG------AGUGCGACAGGAAGUUGUAUAUCUAACUAACUUUGGAUAGUUUUUCUUUGCAGCUACGCAGAGUAAGCAGAAGAAACUUAGAUAAACAGCUGCCUAAAUUGUA .......------..(((((.(((.((((((.(((((((....((((.....((((..((((((......)))))).)))).))))....))))))).)))))).)))...))))) ( -28.30) >DroSec_CAF1 76840 110 - 1 GACGGCG------ACUGCCACAGGAAGUUGUAUAUCUAACUAACUUUGGAUAGUUUGUCUUUGCAGCUACGCAGAGUAAGCAGAAGAAACUUAGAUAAGCAGCUGCCUAAAUUGUA ...(((.------...)))..(((.((((((.(((((((....((((.....(((((.((((((......))))))))))).))))....))))))).)))))).)))........ ( -33.20) >DroSim_CAF1 35550 110 - 1 GACGGCG------ACUGCUACAGGAAGUUGUAUAUCGAACUAACUUUGGAUAGUUUGUCUUUGCAGCUACGCAGAGUAAGCAGAAGAAACUUAGAUAAACAGCUGCCUAAAUUGUA ...(((.------...)))..(((.((((((.((((.......((((.....(((((.((((((......))))))))))).)))).......)))).)))))).)))........ ( -27.14) >DroEre_CAF1 27287 110 - 1 GACGGCG------ACUGGGACAGGAAGUUGUAUGUCUAACUAACUGUGGAUAGUUUGCGUUUGCAGCUACGCACAGUAAGCGGAGGAAACUUAGAUAAACAGCUUCCUAAAUUGUA .......------........((((((((((.(((((..((.((((((..(((((.((....)))))))..)))))).))..(((....)))))))).))))))))))........ ( -37.70) >DroYak_CAF1 28564 116 - 1 GACUGCGACUUCGACUGCGACGGAAAGUUGUAUACCUAACUAACUUUGGAUAGUUUGUGCUGGCAGCUACGCACAGUAAGCAGAAGAAACCUAGAUAAACAGCUUCCUAAAUUGUA ...(((((..(((....))).((((.(((((.((.(((.....((((.......(((((((((...))).))))))......)))).....))).)).)))))))))....))))) ( -22.22) >consensus GACGGCG______ACUGCGACAGGAAGUUGUAUAUCUAACUAACUUUGGAUAGUUUGUCUUUGCAGCUACGCAGAGUAAGCAGAAGAAACUUAGAUAAACAGCUGCCUAAAUUGUA .....................(((.((((((.(((((((((.((((((..(((((.((....)))))))..)))))).))..........))))))).)))))).)))........ (-22.24 = -22.56 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:00 2006