| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,986,310 – 19,986,447 |
| Length | 137 |
| Max. P | 0.998902 |
| Location | 19,986,310 – 19,986,411 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 98.05 |
| Mean single sequence MFE | -20.20 |
| Consensus MFE | -20.20 |
| Energy contribution | -20.20 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.07 |
| Structure conservation index | 1.00 |
| SVM decision value | 3.27 |
| SVM RNA-class probability | 0.998902 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19986310 101 - 23771897 GAGAAAUGGCAGAACAAGCAAAUCAAAUGAAACCCUUCAUCAAGUGCAAAACAUUUUUGGGUGCGACGAGUGUCACAAAAGGAAGACAUUGCCAAAAA---AAA ......((((((.....(((......(((((....)))))....)))......((((((((..(.....)..)).)))))).......))))))....---... ( -20.20) >DroSec_CAF1 76400 102 - 1 GAGAAAUGGCAGAACAAGCAAAUCAAAUGAAACCCUUCAUCAAGUGCAAAACAUUUUUGGGUGCGACGAGUGUCACAAAAGGAAGACAUUGCCAAAAA--AAAA ......((((((.....(((......(((((....)))))....)))......((((((((..(.....)..)).)))))).......))))))....--.... ( -20.20) >DroSim_CAF1 35108 104 - 1 GAGAAAUGGCAGAACAAGCAAAUCAAAUGAAACCCUUCAUCAAGUGCAAAACAUUUUUGGGUGCGACGAGUGUCACAAAAGGAAGACAUUGCCAAAAAAAAAAA ......((((((.....(((......(((((....)))))....)))......((((((((..(.....)..)).)))))).......)))))).......... ( -20.20) >DroEre_CAF1 26840 101 - 1 GAGAAAUGGCAGAACAAGCAAAUCAAAUGAAACCCUUCAUCAAGUGCAAAACAUUUUUGGGUGCGACGAGUGUCACAAAAGGAAGACAUUGCCAAAAA---AAG ......((((((.....(((......(((((....)))))....)))......((((((((..(.....)..)).)))))).......))))))....---... ( -20.20) >DroYak_CAF1 28119 101 - 1 GAGAAAUGGCAGAACAAGCAAAUCAAAUGAAACCCUUCAUCAAGUGCAAAACAUUUUUGGGUGCGACGAGUGUCACAAAAGGAAGACAUUGCCAAAAA---AAG ......((((((.....(((......(((((....)))))....)))......((((((((..(.....)..)).)))))).......))))))....---... ( -20.20) >consensus GAGAAAUGGCAGAACAAGCAAAUCAAAUGAAACCCUUCAUCAAGUGCAAAACAUUUUUGGGUGCGACGAGUGUCACAAAAGGAAGACAUUGCCAAAAA___AAA ......((((((.....(((......(((((....)))))....)))......((((((((..(.....)..)).)))))).......)))))).......... (-20.20 = -20.20 + -0.00)
| Location | 19,986,331 – 19,986,447 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.16 |
| Mean single sequence MFE | -23.88 |
| Consensus MFE | -21.99 |
| Energy contribution | -22.02 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615906 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19986331 116 - 23771897 AGGACAA----UGGAAAAGGCAGUGGCGACAGCGAAACCAGAGAAAUGGCAGAACAAGCAAAUCAAAUGAAACCCUUCAUCAAGUGCAAAACAUUUUUGGGUGCGACGAGUGUCACAAAA .......----...........((((((...(((...(((((((..((......)).(((......(((((....)))))....)))......)))))))...)).)...)))))).... ( -23.20) >DroSec_CAF1 76422 116 - 1 AGGACAA----UGGAAAAGGCAGUGGCGACAGCGAAACCAGAGAAAUGGCAGAACAAGCAAAUCAAAUGAAACCCUUCAUCAAGUGCAAAACAUUUUUGGGUGCGACGAGUGUCACAAAA .......----...........((((((...(((...(((((((..((......)).(((......(((((....)))))....)))......)))))))...)).)...)))))).... ( -23.20) >DroSim_CAF1 35132 116 - 1 AGGACAA----UGGAAAAGGCAGUGGCGACAGCGAAACCAGAGAAAUGGCAGAACAAGCAAAUCAAAUGAAACCCUUCAUCAAGUGCAAAACAUUUUUGGGUGCGACGAGUGUCACAAAA .......----...........((((((...(((...(((((((..((......)).(((......(((((....)))))....)))......)))))))...)).)...)))))).... ( -23.20) >DroEre_CAF1 26861 116 - 1 AGGACAA----UGGAAGAGGCAGUGGCGACAGCGAAACCAGAGAAAUGGCAGAACAAGCAAAUCAAAUGAAACCCUUCAUCAAGUGCAAAACAUUUUUGGGUGCGACGAGUGUCACAAAA .......----...........((((((...(((...(((((((..((......)).(((......(((((....)))))....)))......)))))))...)).)...)))))).... ( -23.20) >DroYak_CAF1 28140 116 - 1 AGGACAA----UGGAAAAGGCAGUGGCGACAGCGAAACCAGAGAAAUGGCAGAACAAGCAAAUCAAAUGAAACCCUUCAUCAAGUGCAAAACAUUUUUGGGUGCGACGAGUGUCACAAAA .......----...........((((((...(((...(((((((..((......)).(((......(((((....)))))....)))......)))))))...)).)...)))))).... ( -23.20) >DroAna_CAF1 30616 120 - 1 AGGACAACAAGUCGAAAAGGCAGUGGAGACAGUGAAACCAGAGAAAUGAGAGAACAAGCAAAUCAAAUGAAACCCUUCAUCAAGUGCAAAACAUUUUUGGGUGCGACGAGUGUCACAAAA ..((((....((((......((.((....)).))..(((..(((((((.(....)..(((......(((((....)))))....)))....))))))).))).))))...))))...... ( -27.30) >consensus AGGACAA____UGGAAAAGGCAGUGGCGACAGCGAAACCAGAGAAAUGGCAGAACAAGCAAAUCAAAUGAAACCCUUCAUCAAGUGCAAAACAUUUUUGGGUGCGACGAGUGUCACAAAA ......................((((((...(((...(((((((..((......)).(((......(((((....)))))....)))......)))))))...)).)...)))))).... (-21.99 = -22.02 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:58 2006