Locus 7433

Sequence ID 3L_DroMel_CAF1
Location 19,985,193 – 19,985,309
Length 116
Max. P 0.933953
window12077

overview

Window 7

Location 19,985,193 – 19,985,309
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 79.25
Mean single sequence MFE -34.57
Consensus MFE -17.44
Energy contribution -18.92
Covariance contribution 1.48
Combinations/Pair 1.19
Mean z-score -2.39
Structure conservation index 0.50
SVM decision value 1.23
SVM RNA-class probability 0.933953
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19985193 116 + 23771897
G-CAUUACAUUUUCGCUGCAACCACUUUUCUUUUUCGGGUU--GAAAAGUGUCACGGCUCUCAAUCAUCUG-GAGCCAAACAUCCGGAGUGACAGCCAGUGCCCGCAAGUGCAAAAUGCA
.-.....((((((((((((...((((((((...........--)))))))).(((((((.(((....((((-((........)))))).))).)))).)))...)).)))).)))))).. ( -37.90)
>DroSec_CAF1 75335 116 + 1
G-CAUUACAUUUUCGCUGCAACCACUUUUCUUUUUCGGGUU--GAAAAGUGUCACGGCUCUCAAUCAUCUG-GAGCCAAACAUACGGAGUGACAGCGAGUGCCCGCAAGUGCAAAAUGCA
(-((((.....(((((((....((((((((...........--))))))))(((((((((.((......))-)))))...(....)..)))))))))))(((.(....).))).))))). ( -39.40)
>DroSim_CAF1 34023 110 + 1
G-CAUUACAUUUUCGCUGCAACCACUUUUCUUUUUCGGGUU--GAAAAGUGUCACGGCUCUCAAUCAUCUG-GAGCCAAACAUCCGGAGUGACAG------CCCGCAAGUGCAAAAUGCA
.-.....((((((((((((...((((((((...........--))))))))....((((.(((....((((-((........)))))).))).))------)).)).)))).)))))).. ( -35.60)
>DroEre_CAF1 25854 116 + 1
G-AAUUACAUUUUCGCUGCGAGCACUUUUCCUUUUCGGGGU--GACAAGUGUCACGCUUCUCAAUCAUCUG-AAGCCAAACAUCCGGAGUGACAGCCAGUGCCCGCAAGUGCAAAAUGCA
.-.....(((((((((((((.(((((......(((((((((--(((....)))))(((((..........)-))))......)))))))........))))).))).)))).)))))).. ( -39.24)
>DroAna_CAF1 29782 113 + 1
AAAAUUCCCUUUUCAAUUUACUGACUUU-------CAAUGUGAGAAGAGUGUCCAACAUUUCAAUCAUGCGGAAGACAAACAUUCGGAUUGACAGCUUGUGGCAGACCCCGCAAAAUGCA
............(((((((.((.((...-------....)).))..((((((......((((........)))).....)))))))))))))((..((((((......))))))..)).. ( -20.70)
>consensus
G_CAUUACAUUUUCGCUGCAACCACUUUUCUUUUUCGGGUU__GAAAAGUGUCACGGCUCUCAAUCAUCUG_GAGCCAAACAUCCGGAGUGACAGCCAGUGCCCGCAAGUGCAAAAUGCA
.......((((((((((((....(((((((.............)))))))((((((((((.((......)).)))))...(....)..)))))...........)).)))).)))))).. (-17.44 = -18.92 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:57 2006