Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,983,898 – 19,983,999 |
Length | 101 |
Max. P | 0.872563 |
Location | 19,983,898 – 19,983,999 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 94.06 |
Mean single sequence MFE | -22.31 |
Consensus MFE | -16.58 |
Energy contribution | -16.78 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -2.00 |
Structure conservation index | 0.74 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.566038 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19983898 101 + 23771897 UAUUCACAUUAUCAGAAUUUUAAUCGAAUUCCGGCUUGUGCAAUGAGGUGUUAAUUUCAUUUGGACAGGUAAUCAGUUUCCCGGCCUCACUUUCACCUCAA ....((((...((.((((((.....)))))).))..))))...(((((((............((...((.((.....)).))..)).......))))))). ( -18.41) >DroSec_CAF1 74121 101 + 1 AAUUCACAUUAUCAGAAUUUUAAUCGAAUUCCGGUUUGUGCAAUGAGGUGUUAAUUUCAUUUGGACAGGCAAUCAGUUUCCCAGCCUCAUUUUCACCUCAA ....((((..(((.((((((.....)))))).))).))))...(((((((..(((.....((((..((((.....)))).))))....)))..))))))). ( -22.50) >DroSim_CAF1 32783 101 + 1 AAUUCACAUUAUCAGAAUUUUAAUCGAAUUCCGGUUUGUGCAAUGAGGUGUUAAUUUCAUUUGGACAGGCAAUCAGUUUCCCAGCCUCAUUUUCACCUCAA ....((((..(((.((((((.....)))))).))).))))...(((((((..(((.....((((..((((.....)))).))))....)))..))))))). ( -22.50) >DroEre_CAF1 24687 101 + 1 UAUUCACAUUAUCAGAAUUUUAAUCGAAUUCCGGUAUGUGCAAUGAGGUGUUAAUUUCAUUUUGACAGGUAAUCAGUUUCCCAGCCUGAUUUUCACCUCCA .((((((((.(((.((((((.....)))))).)))))))).)))((((((..(((.((.....))(((((.............))))))))..)))))).. ( -23.72) >DroYak_CAF1 25676 101 + 1 AAUUCACAUUAUCGGAAUUUUAAUCGAAUUCCGGUAUGUUCAAUGGGGUGUUAAUUUCAUUUUGACAGGUAAUCAGUUCCCCAGCCUCAUUUUCACCUCAA .....((((.((((((((((.....))))))))))))))..(((((((((((((.......))))).((..(.....)..)).)))))))).......... ( -24.40) >consensus AAUUCACAUUAUCAGAAUUUUAAUCGAAUUCCGGUUUGUGCAAUGAGGUGUUAAUUUCAUUUGGACAGGUAAUCAGUUUCCCAGCCUCAUUUUCACCUCAA ....((((...((.((((((.....)))))).))..))))...(((((((..(((.((.....)).((((.............)))).)))..))))))). (-16.58 = -16.78 + 0.20)
Location | 19,983,898 – 19,983,999 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 94.06 |
Mean single sequence MFE | -22.92 |
Consensus MFE | -19.14 |
Energy contribution | -19.22 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.08 |
Mean z-score | -1.64 |
Structure conservation index | 0.84 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.872563 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19983898 101 - 23771897 UUGAGGUGAAAGUGAGGCCGGGAAACUGAUUACCUGUCCAAAUGAAAUUAACACCUCAUUGCACAAGCCGGAAUUCGAUUAAAAUUCUGAUAAUGUGAAUA .(((((((...((((...(((....))).))))...((.....))......)))))))...((((...(((((((.......)))))))....)))).... ( -23.50) >DroSec_CAF1 74121 101 - 1 UUGAGGUGAAAAUGAGGCUGGGAAACUGAUUGCCUGUCCAAAUGAAAUUAACACCUCAUUGCACAAACCGGAAUUCGAUUAAAAUUCUGAUAAUGUGAAUU .(((((((......((((.((....))....)))).((.....))......)))))))...((((...(((((((.......)))))))....)))).... ( -25.00) >DroSim_CAF1 32783 101 - 1 UUGAGGUGAAAAUGAGGCUGGGAAACUGAUUGCCUGUCCAAAUGAAAUUAACACCUCAUUGCACAAACCGGAAUUCGAUUAAAAUUCUGAUAAUGUGAAUU .(((((((......((((.((....))....)))).((.....))......)))))))...((((...(((((((.......)))))))....)))).... ( -25.00) >DroEre_CAF1 24687 101 - 1 UGGAGGUGAAAAUCAGGCUGGGAAACUGAUUACCUGUCAAAAUGAAAUUAACACCUCAUUGCACAUACCGGAAUUCGAUUAAAAUUCUGAUAAUGUGAAUA ..((((((.....((((.(((....)))....))))((.....))......))))))....(((((..(((((((.......)))))))...))))).... ( -24.60) >DroYak_CAF1 25676 101 - 1 UUGAGGUGAAAAUGAGGCUGGGGAACUGAUUACCUGUCAAAAUGAAAUUAACACCCCAUUGAACAUACCGGAAUUCGAUUAAAAUUCCGAUAAUGUGAAUU ..................(((((...((((.....))))...((.......)))))))....((((..(((((((.......)))))))...))))..... ( -16.50) >consensus UUGAGGUGAAAAUGAGGCUGGGAAACUGAUUACCUGUCCAAAUGAAAUUAACACCUCAUUGCACAAACCGGAAUUCGAUUAAAAUUCUGAUAAUGUGAAUU ..((((((......(((.(((....)))....))).((.....))......))))))....((((...(((((((.......)))))))....)))).... (-19.14 = -19.22 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:56 2006