Locus 7430

Sequence ID 3L_DroMel_CAF1
Location 19,981,987 – 19,982,100
Length 113
Max. P 0.541889
window12072

overview

Window 2

Location 19,981,987 – 19,982,100
Length 113
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 88.76
Mean single sequence MFE -46.60
Consensus MFE -39.03
Energy contribution -38.73
Covariance contribution -0.30
Combinations/Pair 1.26
Mean z-score -1.65
Structure conservation index 0.84
SVM decision value 0.02
SVM RNA-class probability 0.541889
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19981987 113 + 23771897
AGCUGCUGGCUGAGUACGUGUUUGUUGGCAGGCGGCGAAGCUUUGCGCCAAAAUGGCGUCGCAACAGCCCCUGCCUUCGGCUUCCGUUUCCGGUUGCUCGGCAAUCGGAAUGC-------
.((.(..(((((((.(((....))).((((((.(((...((...(((((.....))))).))....))))))))))))))))..)..((((((((((...)))))))))).))------- ( -48.10)
>DroSec_CAF1 72267 110 + 1
AGCUGCUGGCUGAGUACGUGUUUGUUGGCAGGCGGCGAAGCUUUGCGCCAAAAUGGCGUCGC---AGCCCCUGCCUUCGGUUUCCGUUUCCGGUUGCUCGGCAAUCGGAAUGC-------
.((.(..(((((((.(((....))).((((((.(((...((...(((((.....))))).))---.))))))))))))))))..)..((((((((((...)))))))))).))------- ( -45.60)
>DroSim_CAF1 30907 110 + 1
AGCUGCUGGCUGAGUACGUGUUUGUUGGCAGGCGGCGAAGCUUUGCGCCAAAAUGGCGUCGC---AGCCCCUGCCUUCGGCUUCCGUUUCCGGUUGCUCGGCAAUCGGAAUGC-------
.((.(..(((((((.(((....))).((((((.(((...((...(((((.....))))).))---.))))))))))))))))..)..((((((((((...)))))))))).))------- ( -48.10)
>DroEre_CAF1 22843 109 + 1
AGCUGCUGGUUGAGUACGUGUUUGCUCGCAGGCGGCGAAGCUUUGCGCCAAAAUGGCGU-GC---AGCCCCUGCCUUCGGCUUCCGUUUCCGGUUGCUCGGCAAUCGGAAUGC-------
.((((((.((.(((((......))))))).))))))((((((..(((((.....)))))-((---((...))))....))))))...((((((((((...))))))))))...------- ( -47.20)
>DroYak_CAF1 23738 109 + 1
AGCUGCUGGUUGAGUACGUGUUUGUUGGCAGGCGGCGAAGCUUUGCGCCAAAAUGGUGU-GC---AGCCCCUGCCUUCGGCUUCCGUUUCCGGUUGCUCGGCAAUCGGAAUGC-------
.((.(..(((((((.(((....))).((((((.(((...((...(((((.....)))))-))---.))))))))))))))))..)..((((((((((...)))))))))).))------- ( -43.40)
>DroAna_CAF1 26156 111 + 1
--CUGCUG---GGGUACGUGUUUGCUACCAGGCGGCAGGGCUUUGCGCCGAAAUGGCGUCG----GGCUUCAGCUUUUGGCUUCCGUUUCCGGUUUCUCGGAAAUCGGAAUGCAGGCAGC
--((((((---.((((.((....))))))...))))))((((..(((((.....)))))..----))))...(((....((((((((((((((....))))))).))))).)).)))... ( -47.20)
>consensus
AGCUGCUGGCUGAGUACGUGUUUGUUGGCAGGCGGCGAAGCUUUGCGCCAAAAUGGCGUCGC___AGCCCCUGCCUUCGGCUUCCGUUUCCGGUUGCUCGGCAAUCGGAAUGC_______
....(..(((((((............((((((.(((...((...(((((.....))))).))....))))))))))))))))..)..((((((((((...)))))))))).......... (-39.03 = -38.73 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:52 2006