Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,980,734 – 19,980,841 |
Length | 107 |
Max. P | 0.695546 |
Location | 19,980,734 – 19,980,841 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 95.51 |
Mean single sequence MFE | -30.10 |
Consensus MFE | -24.92 |
Energy contribution | -24.72 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -1.53 |
Structure conservation index | 0.83 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695546 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19980734 107 + 23771897 GCGGUAUAUGACAAACAGCCAGGACUCAGCCAACAAAGUCCCACGCUCAUGUGGCGUUUGCCACACCAGCAAACACACUACAUGCGAUAUCAGUUGGAGUCGCACUC (((((...........(((..(((((..(....)..)))))...)))...(((((....)))))))).))............((((((.((....)).))))))... ( -28.30) >DroSec_CAF1 71028 107 + 1 GCGGUAUAUGACAAACAGCCAGGACUCAGCCAACAAAGUCCCACGCUCAUGUGGUGUUUGCCACACCAGCAAACACACUAAAUGCGAUAGCAGUUGGAGUCGCACUC (((((((((((......((..(((((..(....)..)))))...)))))))))((((((((.......)))))))).((((.(((....))).))))..)))).... ( -30.50) >DroSim_CAF1 29698 107 + 1 GCGGUAUAUGACAAACAGCCAGGACUCAGCCAACAAAGUCCCACGCUCAUGUGGUGUUUGCCACACCAGCAAACACACUACAUGCGAUAGCAGUUGGAGUCGUACUC ......((((((...((((..(((((..(....)..)))))...(((((((((((((((((.......))))..))))))))))....))).))))..))))))... ( -32.50) >DroEre_CAF1 21585 107 + 1 GCGGUGUAUGACAAACAGCCAGGACUCAGCCAACAAAGUCCCACGCUCUUGUGGUGUUUGCCACACCAGCAGACACCCUACAUGCGAUAUCAAUUGGAGUCGCACUC ...(((((..((((..(((..(((((..(....)..)))))...))).))))(((((((((.......))))))))).)))))(((((.((....)).))))).... ( -32.80) >DroYak_CAF1 22478 106 + 1 GCGGUAUAUGACAAACAGCCAGGACUCAGCCAACAAAGCCCCACGCUCAUGUGGUGUUUGCCACACCAGCAAACACACUAC-UGCGAUAUCAGUUGGAGUCGUACUC ......((((((...((((..((......))............(((....(((.(((((((.......))))))))))...-.)))......))))..))))))... ( -26.40) >consensus GCGGUAUAUGACAAACAGCCAGGACUCAGCCAACAAAGUCCCACGCUCAUGUGGUGUUUGCCACACCAGCAAACACACUACAUGCGAUAUCAGUUGGAGUCGCACUC (((((...........(((..(((((..(....)..)))))...)))...(((((....)))))))).))............((((((..(....)..))))))... (-24.92 = -24.72 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:49 2006