Locus 7427

Sequence ID 3L_DroMel_CAF1
Location 19,980,514 – 19,980,629
Length 115
Max. P 0.968368
window12068

overview

Window 8

Location 19,980,514 – 19,980,629
Length 115
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 90.80
Mean single sequence MFE -33.65
Consensus MFE -30.39
Energy contribution -30.58
Covariance contribution 0.20
Combinations/Pair 1.09
Mean z-score -1.92
Structure conservation index 0.90
SVM decision value 1.62
SVM RNA-class probability 0.968368
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19980514 115 + 23771897
UU-CGAAUGAAGUGUGCC---CCGAUGUAAUAUGCAAUGGCUUAAUAACAUUUCGAUGUCUAUGGCGAUAUUGAAAUGUUGUGCUCUUGUUCGCC-UGGCAAUUAAGUGCAUGCUGCCAU
..-...(((.(((((((.---.(....((((.(((...(((...((((((((((((((((......))))))))))))))))((....))..)))-..))))))).).)))))))..))) ( -34.50)
>DroSec_CAF1 70809 115 + 1
UU-CGAAUGAAGUGUGCC---CCAAUGUAAUAUGCAAUGGCUUAAUAACAUUUCGAUGUCUAUGGCGAUAUUGAAAUGUUGUGCUUUUGUUCGCC-UGGCAAUUAAGUGCAAGCUGCCAU
..-((((..(((.(..(.---(((.(((.....))).)))......((((((((((((((......)))))))))))))))..))))..))))..-(((((.............))))). ( -33.82)
>DroSim_CAF1 29458 115 + 1
UU-CGAAUGAAGUGUGCC---CCAAUGUAAUAUGCAAUGGCUUAAUAACAUUUCGAUGUCUAUGGCGAUAUUGAAAUGUUGUGCUCUUGUUCGCC-UGGCAAUUAAGUGCAAGCUGCCAU
..-(((((.(((.(..(.---(((.(((.....))).)))......((((((((((((((......)))))))))))))))..).))))))))..-(((((.............))))). ( -33.42)
>DroEre_CAF1 21369 115 + 1
UU-CGAAUGAAGUGUGCC---CCGAUGUAAUAUGCAAUGGCCCAACAACAUUUCGAUGUCUAUGGCGAUAUUGAAAUGUUGUGCUCUUGUUCGCC-UGGCAAUUAAGUGCAAGCUGCUAU
..-.(((..((((.((..---(((.(((.....))).)))..))((((((((((((((((......))))))))))))))))))).)..)))((.-..(((......)))..))...... ( -33.40)
>DroYak_CAF1 22242 115 + 1
UU-CGAAUGAAGUGUGCC---CCGAUGUAAUAUGCAAUGGCUUAACAACAUUUCGAUGUCUAUGGCGAUAUUGAAAUGUUGUGCUCUUGUUCGCC-UGGCAAUUAAGUGCAAGCUGCCAU
..-(((((.(((.(((((---....(((.....)))..)))...((((((((((((((((......)))))))))))))))))).))))))))..-(((((.............))))). ( -34.82)
>DroAna_CAF1 21865 120 + 1
CUGCAACUCCCGCCUAUCCUUCUAAUGUAAAAUGCAUGGGCUUAAUAACAUUUCCAUGUCUGGGGCGAUAUUGAAAUGUUGUGCUCUUGUUCGCCCCGGCAAUUAAGUGCAAGCUGCGAU
.((((.((...((((((.(..............).))))))...((((((((((.(((((......))))).))))))))))((.((((...((....))...)))).)).)).)))).. ( -31.94)
>consensus
UU_CGAAUGAAGUGUGCC___CCAAUGUAAUAUGCAAUGGCUUAAUAACAUUUCGAUGUCUAUGGCGAUAUUGAAAUGUUGUGCUCUUGUUCGCC_UGGCAAUUAAGUGCAAGCUGCCAU
.........................(((.....)))(((((...((((((((((((((((......))))))))))))))))((.((((...((....))...)))).)).....))))) (-30.39 = -30.58 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:48 2006