Locus 7425

Sequence ID 3L_DroMel_CAF1
Location 19,979,958 – 19,980,066
Length 108
Max. P 0.630411
window12065

overview

Window 5

Location 19,979,958 – 19,980,066
Length 108
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 78.12
Mean single sequence MFE -21.27
Consensus MFE -10.28
Energy contribution -10.54
Covariance contribution 0.25
Combinations/Pair 1.15
Mean z-score -2.36
Structure conservation index 0.48
SVM decision value 0.20
SVM RNA-class probability 0.630411
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19979958 108 - 23771897
UAUUUGUUGUACUAAAUUGUUCGUCAUUUGGUUU-UUGGAUACUCAUAUUUCCCCAAGGAUCCAAGGACUCCUCCAAUCCCCAUGUACACUUAUAUAUA--UACA--C---AUAAA
(((..((.((((...((((...(((.((((((((-((((..............))))))).)))))))).....))))......))))))..)))....--....--.---..... ( -16.84)
>DroSec_CAF1 70303 108 - 1
UAUUUGUUGUAUUAAAUUGUCCGUCAUUUGGGUU-UUGGAUACUCACAUUUCCCCCAGGAUCCAAGGACUCCUCCAAUCCCCAUAUAUAUUUAUAUAUA--UAUG--U---AUAAA
......(((((...........(((.((((((((-((((...............)))))))))))))))............(((((((((....)))))--))))--)---)))). ( -23.86)
>DroSim_CAF1 28965 109 - 1
UAUUUGUUGUACUAAAUUGUCCGUCAUUUGGGUUUUUGGAUACUCACAUUUCCCCCAGGAUCCAAGGACUCCUCCAAUCCCCAUAUAUAUUUAUAUAUA--UAUG--U---AUAAA
......((((((..........(((.((((((((((.(((..........)))...))))))))))))).............((((((((....)))))--))))--)---)))). ( -21.40)
>DroEre_CAF1 20749 98 - 1
UGUUU-------------GUCUGUCAUGUGGCUU-UUGGAUGCUCACAUUUGCCCCAAGAACCAAGGACUCC---CAU-CCCAUACAUACGUGUAUAUAUUUAUAUAUGCGAUAUA
.(..(-------------(...(((...(((.((-((((..((........)).)))))).)))..)))...---)).-.)........(((((((((....)))))))))..... ( -23.00)
>consensus
UAUUUGUUGUACUAAAUUGUCCGUCAUUUGGGUU_UUGGAUACUCACAUUUCCCCCAGGAUCCAAGGACUCCUCCAAUCCCCAUAUAUACUUAUAUAUA__UAUA__U___AUAAA
......................(((.((((((((.((((...............))))))))))))))).............(((((....))))).................... (-10.28 = -10.54 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:45 2006