Locus 7424

Sequence ID	3L_DroMel_CAF1
Location	19,978,184 – 19,978,276
Length	92
Max. P	0.680073

overview

Window 4

Location	19,978,184 – 19,978,276
Length	92
Sequences	5
Columns	92
Reading direction	reverse
Mean pairwise identity	93.04
Mean single sequence MFE	-16.06
Consensus MFE	-15.50
Energy contribution	-15.02
Covariance contribution	-0.48
Combinations/Pair	1.10
Mean z-score	-1.10
Structure conservation index	0.97
SVM decision value	0.30
SVM RNA-class probability	0.680073
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19978184 92 - 23771897
CACCCACACUUCACAUCCGAGGAAAUGACCAAAUAAUUUUUCCACGCCAUACACCAGCACCAUCUGUUGAUUAAGCACCUUUGUGUGUGUAU
.....((((..((((..((.(((((.............))))).))........(((((.....)))))............)))).)))).. ( -15.72)
>DroSec_CAF1 68536 92 - 1
CACCCACACUUCACAUCUGAGGAAAUGACCAAAUAAUUUUUCCACGCCAUACACCAACACCGUCUGUUGAUUAAGCACCUUGGUGUGUGUAU
....................(((((.............))))).....((((((..((((((..((((.....))))...)))))))))))) ( -18.32)
>DroSim_CAF1 27209 92 - 1
CACCCACACUUCACAUCCGAGGAAAUGACCAAAUAAUUUUUCCACGCCAUACACCAACACCGUCUGUUGAUUAAGCACCUUUGUGUGUGUAU
.....((((..((((..((.(((((.............))))).))........(((((.....)))))............)))).)))).. ( -15.72)
>DroEre_CAF1 19157 92 - 1
CACCCAGACUCCACUUCCGAGGAAAUGACCAAAUAAUUUUUCCACGCUAUACACCAACGCCGUCCGUUGAUUAGGCACCUUCGUGUGUGUAU
.................((.(((((.............))))).))..(((((((((((.....))))).....((((....)))))))))) ( -16.12)
>DroYak_CAF1 20030 92 - 1
CACCCAGACUCCACUUUCUAGGAAAUGACCAAAUAAUUUUUCCACGCUAUACACCAACACCGUCUGUUGAUUAAGCACCUUCGUGUGUGUAU
....................(((((.............))))).....(((((((((((.....))))).....((((....)))))))))) ( -14.42)
>consensus
CACCCACACUUCACAUCCGAGGAAAUGACCAAAUAAUUUUUCCACGCCAUACACCAACACCGUCUGUUGAUUAAGCACCUUCGUGUGUGUAU
....................(((((.............))))).....(((((((((((.....))))).....((((....)))))))))) (-15.50 = -15.02 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:44 2006