Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,972,660 – 19,972,766 |
Length | 106 |
Max. P | 0.544903 |
Location | 19,972,660 – 19,972,766 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 89.26 |
Mean single sequence MFE | -36.98 |
Consensus MFE | -24.72 |
Energy contribution | -25.28 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.10 |
Mean z-score | -2.29 |
Structure conservation index | 0.67 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544903 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19972660 106 + 23771897 AAACAACGACCCAGAUGGCCGUCAGUGGAAAAAAAGAGGAAAA-GUGGAAUGGCUCUGGAGCAGAAGCACAAGUUCCUUCAGUUUCCUCUCCUGCAGGCUCGUCUUU ............((((((((..(((.(.......((((((((.-..(((((.((((((...))).)))....))))).....))))))))))))..))).))))).. ( -31.51) >DroSec_CAF1 63630 106 + 1 AAACAACGACCCAGAUGGCCGUCAG-GGAAAAAAGGAGGAAAAGGUGGAAUGGCUUUGGAGCAGAAGCACAAGUUCCUUCAGUUUCCUCUCCCGCAGGCUCGUCUUU ............((((((((....(-(((......(((((((..(.(((((.(((((......)))))....)))))..)..)))))))))))...))).))))).. ( -37.30) >DroSim_CAF1 22161 106 + 1 AAACAACGACCCAGAUGGCCGUCAG-GGAAAAAAAGAGGAAAAGGUGGAAUGGCUCUGGAGCAGAAGCACAAGUUCCUUCAGUUUCCUCUCCCGCAGGCUCGUCUUU ............((((((((....(-(((......(((((((..(.(((((.((((((...))).)))....)))))..)..)))))))))))...))).))))).. ( -36.80) >DroEre_CAF1 14559 103 + 1 AAACAAGGACCCAGCUGGCCGACAG-G--AAGAAGG-GGGAAUGGUGAAAUGGCUCUGGAGCAGCAGCACAGGUUCCUCCAGUUUCCUCUUCUGCAGGCUCGUCUUU ....((((((..((((.((.((.((-(--(((..((-((((((.(((.....(((....))).....)))..))))))))..))))))..)).)).)))).)))))) ( -39.80) >DroYak_CAF1 14694 103 + 1 AAACAAGGACCCAGAUGGCCGACAG-G--AAGGGAG-GGGAAAGGUGGAAUGGCUCUGCAGCAGAAGCACAAGUUCCCCCAGUUUCCUCUUCUGCAGGCUCGUCUUU ............((((((((..(((-(--...((((-(..(..((.(((((.((((((...))).)))....))))).))..)..)))))))))..))).))))).. ( -39.50) >consensus AAACAACGACCCAGAUGGCCGUCAG_GGAAAAAAAGAGGAAAAGGUGGAAUGGCUCUGGAGCAGAAGCACAAGUUCCUUCAGUUUCCUCUCCUGCAGGCUCGUCUUU ............((((((((..(((.........((((((((..(.(((((.((((((...))).)))....)))))..)..)))))))).)))..))).))))).. (-24.72 = -25.28 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:37 2006