Locus 7418

Sequence ID 3L_DroMel_CAF1
Location 19,970,876 – 19,970,993
Length 117
Max. P 0.956427
window12051

overview

Window 1

Location 19,970,876 – 19,970,993
Length 117
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 81.86
Mean single sequence MFE -35.31
Consensus MFE -24.05
Energy contribution -25.55
Covariance contribution 1.50
Combinations/Pair 1.14
Mean z-score -2.37
Structure conservation index 0.68
SVM decision value 1.47
SVM RNA-class probability 0.956427
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19970876 117 - 23771897
AACAGAAAGCUGAUCAAAGCAACAAGUUGCACGGCCUCGGGCAGAUAGCCACUUGAGCAAAGCGAUUUCCCUGGAAAAGCCGAGGAAAAAGGAAAAUAAAUCUA--AAUGGGUGGCCA-G
..(((....)))......((((....))))..((((((((((.....))).(((.....))))))(((((.(((.....))).)))))................--.......)))).-. ( -27.60)
>DroSim_CAF1 20402 117 - 1
AACAGAAAGCUGAUCAAAGCAACAAGUUGCAAGGCCCCGGGCAGAUAGCCACUUGAGCAAAGCGAUUUCCCUGGAAAAGCCGGGGAAAAAGGAAAAUAAAUCUA--AGUGGGCGGCCA-G
..(((....)))......((((....))))..((((((.(((.....)))(((((.((...))..(((((((((.....)))))))))..............))--))).)).)))).-. ( -37.80)
>DroYak_CAF1 12852 117 - 1
GGCCGAAAGCUGAUCAAAGCAACAAGUUCCAAGGCCCCGGGCAGAUAGCCACUUGAGCAAAACGAUUUCCCUGGAAAAGCCAGGGAAAAAGGAAAAUAAAUCUA--AGUGGGCGGCCA-G
((((....(((......))).............((((..(((.....)))((((((......(..(((((((((.....)))))))))..).........)).)--))))))))))).-. ( -41.16)
>DroAna_CAF1 12602 114 - 1
AGAUGGGAGCUGAUCAAAGCAACAAGUUGCAAGGCUCCGGGCAACUUGCCACUUGUCCAGAAUGAUUUCCCAGGAAAAGCCGUCG------UUGAAUAAAUCCGCGGGUGGGCGGCGAAA
...((((((((......))).((((((.(((((((.....))..))))).))))))...........)))))......((((((.------........(((....))).)))))).... ( -34.70)
>consensus
AACAGAAAGCUGAUCAAAGCAACAAGUUGCAAGGCCCCGGGCAGAUAGCCACUUGAGCAAAACGAUUUCCCUGGAAAAGCCGGGGAAAAAGGAAAAUAAAUCUA__AGUGGGCGGCCA_G
........(((......)))............((((((.(((.....)))...............(((((((((.....)))))))))......................)).))))... (-24.05 = -25.55 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:31 2006