Locus 7416

Sequence ID 3L_DroMel_CAF1
Location 19,968,519 – 19,968,613
Length 94
Max. P 0.979513
window12046

overview

Window 6

Location 19,968,519 – 19,968,613
Length 94
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 74.71
Mean single sequence MFE -29.93
Consensus MFE -11.58
Energy contribution -12.42
Covariance contribution 0.84
Combinations/Pair 1.17
Mean z-score -2.73
Structure conservation index 0.39
SVM decision value 1.84
SVM RNA-class probability 0.979513
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19968519 94 + 23771897
AGCAUUUAU-GCGACGCCAUCGUUUUGUUAGCCGUAACAG---CAGAUUGAAUUGCAAUGCAAUGGGAAUGCAAUUU-----AAUCUG---------------CGUAGGGUGCGAGAU
.(((....)-)).........(((((((..(((.((...(---((((((((((((((.(.(....).).))))))))-----))))))---------------).)).)))))))))) ( -33.40)
>DroSec_CAF1 59543 94 + 1
AGCAUUUAU-CCGACGCCAUCGUUUUGUUAGCCGUAACAU---CAGAUUGAAUUGCAAUGCAAUAGGAAUGCAAUUU-----AAUCUG---------------CGUAGGGUGCGAGAU
.......((-(((.((((..((...(((((....))))).---((((((((((((((.(.(....).).))))))))-----))))))---------------))...)))))).))) ( -28.50)
>DroSim_CAF1 18142 94 + 1
AGCAUUUAU-GCGACGCCAUCGUUUUGUUAGCCGUAACAU---CAGAUUGAAUUGCAAUGCAAUGGGAAUGCAAUUU-----AAUCUG---------------CGUAGGGUGCGAGAU
.(((....)-)).........(((((((..(((.((....---((((((((((((((.(.(....).).))))))))-----))))))---------------..)).)))))))))) ( -28.60)
>DroEre_CAF1 10515 89 + 1
AGCACUUAU-GCGACGCCAUCGUUUUGUUCGCCGUAACCA---GAGAUUGAA-UGCAGCU----GAAAAUGCAAUUU-----AAUCGG---------------UGUGGGGUGCGAGAU
.(((((...-.(.(((((...(((.((.....)).)))..---..(((((((-((((...----.....))).))))-----))))))---------------))).))))))..... ( -24.60)
>DroYak_CAF1 10437 90 + 1
AGCAUUUAU-GCGACGCCAUCGUUUUAUUUGGCGUAACCA---GAGAUUGAAUUGCAGUG----GGAAAUGCAAUUC-----AAUCUG---------------UGUGGGGUGCGAGAU
.((((((..-...((((((..........))))))..(((---.(((((((((((((...----.....))))))))-----))))).---------------)).)))))))..... ( -35.20)
>DroAna_CAF1 10342 116 + 1
AGUGUUUAUUGGGACGCCAUCGUUUUGUUUGGUUUAACAAUUGCACAUUUGAUUGCGUCUUAAUAG--AUGCAAACUAUUUUAAACUGAUACAAUAUUAAAUGCAUUCGGUGUGACAU
.((((((((((((((((.((((...((((((......)))....)))..)))).))))))))))))--))))........(((.(((((..((........))...))))).)))... ( -29.30)
>consensus
AGCAUUUAU_GCGACGCCAUCGUUUUGUUAGCCGUAACAA___CAGAUUGAAUUGCAAUGCAAUGGGAAUGCAAUUU_____AAUCUG_______________CGUAGGGUGCGAGAU
...........((.((((...(((...........))).....((((((((((((((............)))))))).....))))))....................)))))).... (-11.58 = -12.42 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:26 2006