Locus 7415

Sequence ID 3L_DroMel_CAF1
Location 19,968,274 – 19,968,381
Length 107
Max. P 0.528014
window12045

overview

Window 5

Location 19,968,274 – 19,968,381
Length 107
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 80.38
Mean single sequence MFE -28.04
Consensus MFE -17.17
Energy contribution -18.68
Covariance contribution 1.50
Combinations/Pair 1.00
Mean z-score -1.74
Structure conservation index 0.61
SVM decision value -0.01
SVM RNA-class probability 0.528014
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19968274 107 + 23771897
UUAUUGCAGCUCUGGGCCACGCCCCUCCGGCAUCCGCCCCUUUUUGUGGGGCAACCCCUCGCUUCCCCAUGCA--CCAUGCCAGUGCACUGGCAGUGGCCAUUUCACGU
..............(((((((((.....)))....(((((.......)))))........((........)).--...((((((....))))))))))))......... ( -39.60)
>DroSec_CAF1 59304 100 + 1
UUAUUGCAGCUCUCGGCCACGCCCCUCCGGCAUCCGCCCCUUUUG--GGUGCAACCCCCCGCC-CCCCAUGCA--CCAUGC----ACCAUGCCAGUGGCCAUUUCAUGU
..............(((((((......)(((((..(((((....)--)).))...........-.....(((.--....))----)..))))).))))))......... ( -28.00)
>DroSim_CAF1 17903 100 + 1
UUAUUGCAGCUCUCGGCCACGCCCCUCCGGCAUCCGCCCCUUUUG--GGUGCAACCCCCCGCC-CCCCAUGCA--CCAUGC----ACCAUGCCAGUGGCCAUUUCACGU
..............(((((((......)(((((..(((((....)--)).))...........-.....(((.--....))----)..))))).))))))......... ( -28.00)
>DroYak_CAF1 10200 94 + 1
UUAUUGCAGCGCUCAGCCACGCCCCUCAGGCAUCCGCCCCUCUG---GAGACCACCCAUCGCC---CC-----CUCCUUGC----GCCCCGCCACUGGCCAUUUCACUU
........((((........(((.....)))............(---(((.............---..-----))))..))----))...(((...))).......... ( -16.56)
>consensus
UUAUUGCAGCUCUCGGCCACGCCCCUCCGGCAUCCGCCCCUUUUG__GGGGCAACCCCCCGCC_CCCCAUGCA__CCAUGC____ACCAUGCCAGUGGCCAUUUCACGU
..............(((((((((.....)))....(((((.......)))))..........................................))))))......... (-17.17 = -18.68 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:25 2006