Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,966,765 – 19,966,868 |
Length | 103 |
Max. P | 0.975724 |
Location | 19,966,765 – 19,966,868 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 87.22 |
Mean single sequence MFE | -28.52 |
Consensus MFE | -22.64 |
Energy contribution | -23.20 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.09 |
Mean z-score | -2.40 |
Structure conservation index | 0.79 |
SVM decision value | 1.76 |
SVM RNA-class probability | 0.975724 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19966765 103 + 23771897 GUCCUCGCC-GGGCACUCUGUUUGUUUUCAGUUCGAAAAUAGAUAUUCUGGCACUUACACGCAUUUAUAGUUCGGUUUGAUAAUGUG-CCGGACUUUCUGUUUGC ......(((-(((.....(((((((((((.....))))))))))).))))))........(((..((.((((((((..........)-)))))))...))..))) ( -28.40) >DroSec_CAF1 8290 103 + 1 GUCCUCGCC-GGGCACUCUGUUUGUUUUCAGUUCGAAAAUAGAUAUUCUGGCACUUACAGGCUUUUAUAGUUCGGUUCGAUAGUGUG-CCGGACUUUCUGUUUGC ......(((-(((.....(((((((((((.....))))))))))).)))))).....(((((......((((((((.((....)).)-)))))))....))))). ( -30.10) >DroSim_CAF1 8012 101 + 1 GUCCUCGCC-GGGCACUCUGUUUGUUUUCAGUUCGAAAAUAGAUAUUCUGGCACUUACAGGCUUUUACAGUUUGGUUUGAUAAUGUG-CCGGACU--CUGUUUGC ((((.....-))))....(((((((((((.....))))))))))).(((((((((((((((((..........)))))).))).)))-)))))..--........ ( -30.80) >DroEre_CAF1 8746 105 + 1 GUCCUCGCCCUGGCACUCUGUUUGUUUUCAGUUUGAAAAUAGAUAUUCUGGCACUUACAGGCUUUUAUAGUUCGGCUUGAUAAUGUGUCCGGACUUUCUGUUUGC ((((..((....))....(((((((((((.....)))))))))))....((((((((((((((..........)))))).))).))))).))))........... ( -28.40) >DroYak_CAF1 8700 87 + 1 ------------------UGUUUGUUUUCAGUUUGAAAAUAGAUAUUCUGGCACUUACAGGCUUUUAUAGUUUGGUCUGAUAAUGUGUCCGGACUUUUUGUUUGC ------------------(((((((((((.....))))))))))).(((((((((((((((((..........)))))).))).))).)))))............ ( -24.90) >consensus GUCCUCGCC_GGGCACUCUGUUUGUUUUCAGUUCGAAAAUAGAUAUUCUGGCACUUACAGGCUUUUAUAGUUCGGUUUGAUAAUGUG_CCGGACUUUCUGUUUGC ((((......))))....(((((((((((.....))))))))))).(((((((((((((((((..........)))))).))).))).)))))............ (-22.64 = -23.20 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:24 2006