Locus 7413

Sequence ID 3L_DroMel_CAF1
Location 19,945,206 – 19,945,323
Length 117
Max. P 0.649157
window12043

overview

Window 3

Location 19,945,206 – 19,945,323
Length 117
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 95.44
Mean single sequence MFE -40.80
Consensus MFE -38.28
Energy contribution -37.73
Covariance contribution -0.55
Combinations/Pair 1.10
Mean z-score -1.70
Structure conservation index 0.94
SVM decision value 0.24
SVM RNA-class probability 0.649157
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19945206 117 - 23771897
AGCCGGAAGGUGGCCAACGUCUUCUGAAUAACCGGGCGAUUAUCGUUCACGUCGAGGAUCGUUAUUGGCAACAUUUUUGACGUCGAUUUGGUCGGGUUACCCAGAUCGUAGACGGUG
.(((....)))......(((((((((..(((((.(((.(..((((...(((((((((((.(((......)))))))))))))))))).).))).)))))..))))....)))))... ( -42.50)
>DroSec_CAF1 10273 117 - 1
AGCCGGAAGGUGGCCAAUGUCUUCUGAAUAACCGGGCGAUUAUCGUUCACGUCGAGGAUCGUUAUUGGCAACAUUUUUGACGUCGAUUUGGUCGGGUUACCCAGAUCGUAGACGGUG
.(((....))).(((...((((((((..(((((.(((.(..((((...(((((((((((.(((......)))))))))))))))))).).))).)))))..))))....))))))). ( -41.50)
>DroYak_CAF1 10743 117 - 1
AGCCGGAAGGUCGCCAAUGUCUUCUGAAUAACCGGACGAUUGUCGUUCACGUCGAGGAUCGUUAUUGGCAACAUUUUUGAUGUCGAUUUCGUCGGGCUACCCAGAUCGUAAACGGUG
.(((....)))((((.(((...((((..((.((.(((((..((((...(((((((((((.(((......)))))))))))))))))).))))).)).))..)))).)))....)))) ( -38.40)
>consensus
AGCCGGAAGGUGGCCAAUGUCUUCUGAAUAACCGGGCGAUUAUCGUUCACGUCGAGGAUCGUUAUUGGCAACAUUUUUGACGUCGAUUUGGUCGGGUUACCCAGAUCGUAGACGGUG
.(((....))).(((.(((...((((..(((((.(((.(..((((...(((((((((((.(((......)))))))))))))))))).).))).)))))..)))).)))....))). (-38.28 = -37.73 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:23 2006