Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,944,471 – 19,944,631 |
Length | 160 |
Max. P | 0.775362 |
Location | 19,944,471 – 19,944,591 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -39.05 |
Consensus MFE | -36.04 |
Energy contribution | -36.48 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.08 |
Mean z-score | -1.66 |
Structure conservation index | 0.92 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.775362 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19944471 120 + 23771897 CGUCAAGGAUAUCAACGAUAAUCGGCCGCAGUUUGAACGUGUGAACUGCUAUGGCAAAGUGACCAAAUCGGCGCCGAUGGGCACCGAGGUAUUCGUUACCUCAGCCAUUGACUUUGAUGC ((((((((.......((.....))...(((((((........))))))).(((((...(((.((..((((....)))).))))).((((((.....)))))).)))))...)))))))). ( -41.90) >DroSec_CAF1 9878 120 + 1 CGUCAAGGAUAUCAACGAUAAUCGGCCACAGUUUGAACGUGUGAACUGCUAUGGCAAAGUGACCAAAUCGGCGCCGAUGGGCACCGAGGUAUUCGUUACCUCAGCCAUUGACUUUGAUGC ((((((((...(((.((.....))((((((((((........))))))...))))....))).......((((((....)))...((((((.....)))))).))).....)))))))). ( -39.70) >DroSim_CAF1 9424 120 + 1 CGUCAAGGAUAUCAACGAUUAUCGGCCGCAGUUUGAACGUGUGAACUGCUAUGGCAAAGUGACCAAAUCGGCGCCGAUGGGCACCGAGGUAUUCGUUACCUCAGCCAUUGACUUUGAUGC ((((((((...((((....(((((((((((((((........)))))))..((((.....).))).....).)))))))(((...((((((.....)))))).))).)))))))))))). ( -42.30) >DroYak_CAF1 10008 120 + 1 CGUCAAGGAUAUUAACGAUAAUCGACCGCAGUUUGAACGAGUGAACUGCUAUGGAAAAGUGACCAAAUCGGCCCCGAUGGGUACCGAAGUUUUCGUUACCUCAGCUAUUGACUUUGACGC ((((((((....((((((.(((.....(((((((........)))))))..(((........)))..((((..((....))..)))).))).))))))..((((...)))))))))))). ( -32.30) >consensus CGUCAAGGAUAUCAACGAUAAUCGGCCGCAGUUUGAACGUGUGAACUGCUAUGGCAAAGUGACCAAAUCGGCGCCGAUGGGCACCGAGGUAUUCGUUACCUCAGCCAUUGACUUUGAUGC ((((((((.......((.....))...(((((((........))))))).(((((...(((.((..((((....)))).))))).((((((.....)))))).)))))...)))))))). (-36.04 = -36.48 + 0.44)
Location | 19,944,511 – 19,944,631 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.42 |
Mean single sequence MFE | -33.35 |
Consensus MFE | -26.66 |
Energy contribution | -26.98 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.04 |
Mean z-score | -1.59 |
Structure conservation index | 0.80 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.698240 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19944511 120 - 23771897 CUCGUUGCCGUCGCUCAACCUAUAGGAUAUUAUAUCGCCUGCAUCAAAGUCAAUGGCUGAGGUAACGAAUACCUCGGUGCCCAUCGGCGCCGAUUUGGUCACUUUGCCAUAGCAGUUCAC .((((((((.((......((....))..........(((.((......))....))).))))))))))..(((((((((((....))))))))...)))....((((....))))..... ( -34.80) >DroSec_CAF1 9918 120 - 1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCUGCAUCAAAGUCAAUGGCUGAGGUAACGAAUACCUCGGUGCCCAUCGGCGCCGAUUUGGUCACUUUGCCAUAGCAGUUCAC ......................................((((....(((((.......((((((.....))))))((((((....)))))))))))(((......)))...))))..... ( -29.70) >DroSim_CAF1 9464 120 - 1 CUCGUUGCCAUCGCUCAACCUAUAGGAUAUUAUAUCGCCUGCAUCAAAGUCAAUGGCUGAGGUAACGAAUACCUCGGUGCCCAUCGGCGCCGAUUUGGUCACUUUGCCAUAGCAGUUCAC .((((((((.((......((....))..........(((.((......))....))).))))))))))..(((((((((((....))))))))...)))....((((....))))..... ( -34.80) >DroYak_CAF1 10048 120 - 1 CUCGUUGCCAUCGCUCAAGCGAUAGGAUAUUAUAUCGCCUGCGUCAAAGUCAAUAGCUGAGGUAACGAAAACUUCGGUACCCAUCGGGGCCGAUUUGGUCACUUUUCCAUAGCAGUUCAC .((((((((..(((....((((((........))))))..)))......(((.....))))))))))).(((((((((.(((...))))))))..(((........)))....))))... ( -34.10) >consensus CUCGUUGCCAUCGCUCAACCUAUAGGAUAUUAUAUCGCCUGCAUCAAAGUCAAUGGCUGAGGUAACGAAUACCUCGGUGCCCAUCGGCGCCGAUUUGGUCACUUUGCCAUAGCAGUUCAC ......................................((((....(((((.......((((((.....))))))((((((....)))))))))))((........))...))))..... (-26.66 = -26.98 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:22 2006