Locus 7410

Sequence ID 3L_DroMel_CAF1
Location 19,937,543 – 19,937,642
Length 99
Max. P 0.912984
window12037

overview

Window 7

Location 19,937,543 – 19,937,642
Length 99
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.02
Mean single sequence MFE -17.80
Consensus MFE -5.78
Energy contribution -6.90
Covariance contribution 1.12
Combinations/Pair 1.24
Mean z-score -2.05
Structure conservation index 0.32
SVM decision value 1.09
SVM RNA-class probability 0.912984
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19937543 99 - 23771897
CAAUUUUUAGCUUCGACUCGUCAAUUUUGAAUUCUAGUCUGGCGAUUUCCGCCUCUUUUGAGUUCAAAAUUUUC---------------------UCGAUUUCAACAAUCUGAUCAUUCC
............((((...(..((((((((((((.((...((((.....)))).))...))))))))))))..)---------------------))))..................... ( -21.00)
>DroSec_CAF1 3211 99 - 1
CAAUUUUUAGCUUCGACUCGUCAAUUUUGAAUUCUAGUCUCGCGAUUUCCUCUUCUUUUGACUUCAAAAUUUUC---------------------UCGAUUUCAACAAUCUGAUCAUUCC
............((((...(..((((((((.....((((....((........))....))))))))))))..)---------------------))))..................... (  -9.90)
>DroSim_CAF1 2469 99 - 1
CAAUUUUUAGCUUCGACUCGUCAAUUUUGAAUUCUAGUCUGGCGAUUUCCGCUUCUUUUGACUUCAAAAUUUUC---------------------UCGAUUUCAACAAUCUGAUUAUUCA
............((((...(..(((((((((.((.((...((((.....)))).))...)).)))))))))..)---------------------))))..................... ( -15.40)
>DroEre_CAF1 3455 120 - 1
CAAUUUGGAGCUUCGACUCGUCAACUUUAAAUUCUAAUCUGGCGAUUUCCGUCUCCUUUUCCUUUAGAAUUUCUUCAUAAUUCCGUGUUUUGGCAUCCAAUUCAACAAUCUGAUCAUUCU
....((((((((..(((.((........(((((((((...((.(((....))).)).......)))))))))...........)).)))..))).))))).................... ( -20.01)
>DroYak_CAF1 3077 120 - 1
UAAUUUUUUGCUUCGACUCGUCAAUUUUAAAUUCUAGUAUGGCGACUUCGGUUUCCUUUUCUUGCAGAAUUUUUACAAAUUUCCGUGUCUCGGAAUCUAAUUCAGCAAUGCAAUCAUUCU
.......(((((..(((.((..(((((.(((((((.(((.((.(((....))).))......))))))))))....)))))..)).)))...((((...)))))))))............ ( -22.70)
>consensus
CAAUUUUUAGCUUCGACUCGUCAAUUUUGAAUUCUAGUCUGGCGAUUUCCGCUUCUUUUGACUUCAAAAUUUUC_____________________UCGAUUUCAACAAUCUGAUCAUUCC
..............((....))(((((((((.((......((((.....))))......)).)))))))))................................................. ( -5.78 =  -6.90 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:17 2006