Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,921,354 – 19,921,452 |
Length | 98 |
Max. P | 0.630743 |
Location | 19,921,354 – 19,921,452 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 89.55 |
Mean single sequence MFE | -29.02 |
Consensus MFE | -19.44 |
Energy contribution | -20.75 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.15 |
Mean z-score | -2.34 |
Structure conservation index | 0.67 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.630743 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19921354 98 + 23771897 CCCCAUCCUUGUUGCCACUGCCUGGGACCCUUCAACAACCAACAGGUGUUCCAAUCACAGCAG---CAGCAGCAACAAGCCCAAAGUGUCUGCUGCCCCUU .........((((((...((..(((((((((............))).))))))..))..))))---))(((((((((.........))).))))))..... ( -26.60) >DroSec_CAF1 57083 101 + 1 CCCCAUCCUUGUUGCCACUGCCUGGGACCCUUCAACAACCAACAGGUGUUCCAAUCGCAGCAGCGGCAGCAGCAACAAGCCCAAAGAGUCUGCUGCCCCUU .......((((((((..((((((((((((((............))).))))))...((....)))))))..))))))))...................... ( -31.60) >DroSim_CAF1 44420 101 + 1 CCCCAUCCUUGUUGCCACUGCCUGGGACCCUUCAACAACCAACAGGUGUUCCAAUCGCAGCAGCGGCAGCAGCAACAAGCCCAAAGUGUCUGCUGCCCCUU ..........(((((...(((.(((((((((............))).))))))...))))))))((((((((..((.........))..)))))))).... ( -32.40) >DroYak_CAF1 64495 95 + 1 GCCCAUCCUUGUUGCCACUGCCUAGGAUUCUUCAACAACCAACAGAUGUUCCAGUCGCAGCAG------CAGCAACUGGUACAGAGUGCCUGCUGCCCCUU .........((((((.((((....(((((((............))).)))))))).))))))(------(((((...(((((...)))))))))))..... ( -25.50) >consensus CCCCAUCCUUGUUGCCACUGCCUGGGACCCUUCAACAACCAACAGGUGUUCCAAUCGCAGCAG___CAGCAGCAACAAGCCCAAAGUGUCUGCUGCCCCUU .........(((((((.((((.(((((((((............))).))))))......)))).)))))))(((.((.((.......)).)).)))..... (-19.44 = -20.75 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:13 2006