Locus 7407

Sequence ID 3L_DroMel_CAF1
Location 19,921,217 – 19,921,315
Length 98
Max. P 0.741457
window12031

overview

Window 1

Location 19,921,217 – 19,921,315
Length 98
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 88.58
Mean single sequence MFE -37.16
Consensus MFE -25.16
Energy contribution -26.52
Covariance contribution 1.36
Combinations/Pair 1.13
Mean z-score -2.52
Structure conservation index 0.68
SVM decision value 0.45
SVM RNA-class probability 0.741457
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19921217 98 - 23771897
GCACGAGCAACAGGGAUAAAAUCCUCCAGAAAUCGGAAUAUUCGGCUGC---UGCUGCAGCGCACAAGUGGAGGUUCCGAGAACUGGGUGCAUCAUGUGCU
(((((((((...(((((...)))))((((...(((((((.(((.(((((---....)))))((....))))).)))))))...)))).))).))..)))). ( -37.10)
>DroSec_CAF1 56946 98 - 1
GCACGAGCAACAGGGAUAAAAUCCUCCGGAAAUCGGAAUAUUCGUCUGC---UGCUGGAGCGCACAAGUGGAGGUUCCGAGAACUGGGUGCAUCACGUGCU
(((((.(((...(((((...)))))((((...(((((((.((((..((.---(((......)))))..)))).)))))))...)))).)))....))))). ( -35.70)
>DroSim_CAF1 44283 98 - 1
GCACGAGCAACAGGGAUAAAAUCCUCCAGAAAUCGGAAUAUUCUGCUGC---UGCUGGAGCGCACAAGUGGAGGUUCCGAGAACUGGGUGCAUCACGUGCU
(((((.(((...(((((...)))))((((...(((((((.(((..((..---(((......)))..))..))))))))))...)))).)))....))))). ( -37.40)
>DroEre_CAF1 56464 98 - 1
GCAGGAGCAACAGGGAUAGAAUCCUCCCGAAAUCGGAAUACUUGGCUGCUGUUGCUGCAGCGCACAAGUGG---UUCCGAGAACCGGGUGCACCGUGUGCU
(((((.(((...(((((...)))))((((...((((((((((((((.(((((....))))))).))))).)---))))))....))))))).)).)))... ( -41.50)
>DroYak_CAF1 64358 98 - 1
GCAGGAGCAACAGGGAUAAAAUCCCCCCGAAAUCGGAAUAUUUGGCUGCUGUUGCUGCAGCGGACAAGUGG---AUCCUAGAACUGGGUGCAUCAGGUGCU
(((.(((((...(((((...)))))((((.....(((.((((((.(((((((....))))))).)))))).---.)))......))))))).))...))). ( -34.10)
>consensus
GCACGAGCAACAGGGAUAAAAUCCUCCAGAAAUCGGAAUAUUCGGCUGC___UGCUGCAGCGCACAAGUGGAGGUUCCGAGAACUGGGUGCAUCACGUGCU
(((((.(((...(((((...)))))((((...(((((((...(.(((.....(((....)))....))).)..)))))))...)))).)))....))))). (-25.16 = -26.52 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:12 2006