Locus 7404

Sequence ID 3L_DroMel_CAF1
Location 19,917,227 – 19,917,347
Length 120
Max. P 0.914674
window12025

overview

Window 5

Location 19,917,227 – 19,917,347
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.39
Mean single sequence MFE -37.35
Consensus MFE -21.96
Energy contribution -22.88
Covariance contribution 0.92
Combinations/Pair 1.39
Mean z-score -2.37
Structure conservation index 0.59
SVM decision value 1.10
SVM RNA-class probability 0.914674
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19917227 120 + 23771897
GGUCUUGGAUGAGCGUCUGAUCUGCGAGCGACAGCAUGCGGAGGAGAAGCGAUUGUUCCAGCUCAAAAUGGAGCAAUUCAAGAAAGUGGAGGAGAAGUUCAAGUUGGACAGGGAGCAACU
..((((((((..((.(((..((((((.((....)).))))))..))).))...(((((((........))))))))))))))).............((((.....))))........... ( -37.30)
>DroVir_CAF1 53829 120 + 1
GAUUUAUGCCAAUCGGCUGCUUUGUGAGCGACAACAUGCUGAAUAUCACAGAAGUUUCAUGCACAAAAUGGUUGAGAGCAAAAAGCAGGAAGAAAACCUACAGGCACACAAGAAUCAGCU
(((((.((((..((((((..((((((...((.(((...(((.......)))..)))))...))))))..))))))..((.....))(((.......)))...)))).....))))).... ( -26.50)
>DroSec_CAF1 52912 120 + 1
NGUCUUGGAUGAGCGUCUGAUCUGCGAGCGACAGCAUGCGGAGGAGAAGCGAAUGUUCCAGCUCAAAAUGGAGCAGUUCAAGAAAGUGGAGGAGAAGCUCAAGCUGGACAGGGAGCAACU
..((((((((..((.(((..((((((.((....)).))))))..))).))...(((((((........))))))))))))))).............((((...((....)).)))).... ( -40.50)
>DroSim_CAF1 37249 120 + 1
GGUCUUGGAUGAGCGUCUGAUCUGCGAGCGACAGCAUGCGGAGGAGAAGCGAUUGUUCCAGCUCAAAAUGGAGCAGUUCAAGAAAGUGGAGGAGAAACUCAAGCUGGACAGGGAGCAAAU
..((((((((..((.(((..((((((.((....)).))))))..))).))...(((((((........))))))))))))))).....(((......)))..(((........))).... ( -40.20)
>DroEre_CAF1 52310 120 + 1
GAUCCUGGACGAGCGCCUGACCUGCGAGCGAAAGCAUGCGGAGGAGAAGCGCUUGUAUUCGCUCAAAAUGGAGAAAUUCAAGGCACUGGAGGAGAAGCUCAAGCUGGACAGGGAGCAACU
..(((((..(.(((((((.......(((((((.(((.(((.........))).))).)))))))....((((....))))))))....(((......)))..))))..)))))....... ( -43.40)
>DroYak_CAF1 60006 120 + 1
GAUCCUGGAUGAGCGACUGAUCUGCGAGCGGAAGCAUGCGGAGGAGAAGCGAUUGUAUUUGCUCAAAAUGGAGCAAUUCAAGAAAGUGGAGGAGAAACUGAAGCUGGACAGGGAGCAACU
..(((((..(.(((..((..((((((.((....)).))))))..))..((..(((...((((((......))))))..)))....))...............))).).)))))....... ( -36.20)
>consensus
GAUCUUGGAUGAGCGUCUGAUCUGCGAGCGACAGCAUGCGGAGGAGAAGCGAUUGUUCCAGCUCAAAAUGGAGCAAUUCAAGAAAGUGGAGGAGAAGCUCAAGCUGGACAGGGAGCAACU
..((((((((..((.(((..((((((.((....)).))))))..))).))..........((((......)))).))))))))...................(((........))).... (-21.96 = -22.88 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:06 2006