Locus 7402

Sequence ID 3L_DroMel_CAF1
Location 19,911,021 – 19,911,119
Length 98
Max. P 0.984869
window12022

overview

Window 2

Location 19,911,021 – 19,911,119
Length 98
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 94.44
Mean single sequence MFE -22.66
Consensus MFE -22.51
Energy contribution -22.82
Covariance contribution 0.31
Combinations/Pair 1.07
Mean z-score -2.19
Structure conservation index 0.99
SVM decision value 1.99
SVM RNA-class probability 0.984869
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19911021 98 + 23771897
ACAGUUGAGUAU-UGUUAGCAACAAUUUGUUUUUAGUUAGUUGGUAGUGUUAAAUUGUUAUUGACUAUUUCGUACGAUUUGUUAGCUAAUCUUAUGCGA
........((((-.(((((((((((.((((.......((((..(((..(......)..)))..))))......)))).))))).))))))...)))).. ( -24.12)
>DroSec_CAF1 46897 98 + 1
ACAGUUGAGUAU-UGUUAGCAACAAUUUGUUUUUAGUUAGUUGGUAGUGUUAAAUUGUUAUUGACUAUUUCGUACGAUUUGUUAGCUAAUCUUAUGCGA
........((((-.(((((((((((.((((.......((((..(((..(......)..)))..))))......)))).))))).))))))...)))).. ( -24.12)
>DroEre_CAF1 45996 98 + 1
GCAGUUGAGUAUUUGUUAGCAACAAUUUGUUUUUAGUUAGUUGGUAGAGU-AACUUGUUAUUGACUGUUUCGUACGAUUUGUUAGCUAAUCUUAUGCGA
........((((..(((((((((((.((((.......((((..((((...-......))))..))))......)))).))))).))))))...)))).. ( -22.82)
>DroYak_CAF1 45909 98 + 1
ACUGUUGAGUAUUUGUUAGCGAAAAUUUGUU-UUAGUUAGUUGGUAGAGUUAAAUUGUUAUUGACUGUUUCGUACGAUUUGUUAGCUAAUCUUAUGCGA
..(((((((.(((.(((((((((...((((.-.....((((..((((.(......).))))..))))......))))))))))))).))))))).))). ( -19.60)
>consensus
ACAGUUGAGUAU_UGUUAGCAACAAUUUGUUUUUAGUUAGUUGGUAGAGUUAAAUUGUUAUUGACUAUUUCGUACGAUUUGUUAGCUAAUCUUAUGCGA
........((((..(((((((((((.((((.......((((..((((((......))))))..))))......)))).))))).))))))...)))).. (-22.51 = -22.82 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:03 2006