Locus 7401

Sequence ID 3L_DroMel_CAF1
Location 19,908,911 – 19,909,001
Length 90
Max. P 0.609597
window12021

overview

Window 1

Location 19,908,911 – 19,909,001
Length 90
Sequences 3
Columns 90
Reading direction forward
Mean pairwise identity 83.08
Mean single sequence MFE -17.47
Consensus MFE -13.26
Energy contribution -12.93
Covariance contribution -0.33
Combinations/Pair 1.14
Mean z-score -1.69
Structure conservation index 0.76
SVM decision value 0.15
SVM RNA-class probability 0.609597
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19908911 90 + 23771897
UGUUGAACGAAAUCAUUUGUGAUUUUGAUAAGGUAAGUUCACUUAACUAAUUUUAUGUUACAUCUUAAUGUUACAUCGAGCAUGAGCUUC
.......((((((((....))))))))(((((((.((((.....)))).)))))))(((.(((((..(((...)))..)).))))))... ( -15.80)
>DroSec_CAF1 44917 86 + 1
UGUUGAACGAAAUCAUUUGUGAUUUCGAUAAGGUAUGUAACUUUAACUUAUCUUAU-UAUUAUCUUAAAGUUACAUCGAGCAUGAU--U-
((((...((((((((....)))))))).....(.((((((((((((..((......-...))..))))))))))))).))))....--.- ( -20.90)
>DroSim_CAF1 28218 84 + 1
UAUUGAAUGAAAUCAUUUGUGAUUUCGAUAAGGUAAGUGGCUU--ACUAAUCUUAU-UUGUAUCUUAAAGUUACAUCGAGCAUGAU--U-
..((((..(((((((....)))))))((((((((.((((...)--))).)))))))-)((((.(.....).)))))))).......--.- ( -15.70)
>consensus
UGUUGAACGAAAUCAUUUGUGAUUUCGAUAAGGUAAGUAACUUUAACUAAUCUUAU_UUAUAUCUUAAAGUUACAUCGAGCAUGAU__U_
..((((.((((((((....))))))))(((((((.(((.......))).)))))))...................))))........... (-13.26 = -12.93 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:01 2006