Locus 740

Sequence ID 3L_DroMel_CAF1
Location 2,229,345 – 2,229,465
Length 120
Max. P 0.693476
window1132

overview

Window 2

Location 2,229,345 – 2,229,465
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.33
Mean single sequence MFE -46.10
Consensus MFE -41.16
Energy contribution -42.16
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.26
Structure conservation index 0.89
SVM decision value 0.33
SVM RNA-class probability 0.693476
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2229345 120 - 23771897
CGCUUGCUGACUUCUCGGCUUAUCUCAAUCAUGUCCAGAGCCUGGUUCACACAGGCGUUGGCGUGGGUAGGAAAGUAGCUGGGAAUCCCAGUGACGCAGGUGUAUGAAUCGCCCAGGAAC
.(((..(((..(((((((((..(((...(((((.((((.(((((.......))))).)))))))))...)))....)))))))))...)))..).)).((((.......))))....... ( -45.30)
>DroSec_CAF1 10275 120 - 1
CGCUUGCUGACUUCUCGGCUUAUCUCAAUCAUGUCCAGGGCCUGUUUCACGCAGGCGUUGGCGUGGGUCGGAAAGUAGCUGGGAAUCCCAGUGACGCAGGUGUACGAAUCGCCCAGGAAC
.(((..(((..(((((((((..(((...(((((.((((.((((((.....)))))).)))))))))...)))....)))))))))...)))..).)).((((.......))))....... ( -47.90)
>DroSim_CAF1 10364 120 - 1
CGCUUGCUGACUUCUCGGCUUAUCUCAAUCAUGUCCAGAGCCUGGUUCACGCAGGCGUUGGCGUGGGUUGGAAAGUAGCUGGGAAUCCCAGUGACGCAGGUGUACGAAUCGCCCAGGAAC
.(((..(((..(((((((((..((.((((((((.((((.((((((....).))))).))))))).)))))))....)))))))))...)))..).)).((((.......))))....... ( -44.90)
>DroEre_CAF1 23300 120 - 1
CGCUGGCUGGCUUCUCGGCUUAUCUCAAUCAUGUCCAGAGCCUGGUUCACACAGGCGUUGGCGUGGGCAGAAAAGUAGCUGGGAAUCCCAGUGACGCAGGUGUACGAAUCGCCCAGGAAC
.(((.(((((.(((((((((..(((...(((((.((((.(((((.......))))).)))))))))..))).....)))))))))..))))).).)).((((.......))))....... ( -46.90)
>DroYak_CAF1 10797 120 - 1
CGCUGGCUGGCUUCGCGGCUUAUCUCAAUCAUGUCCAGAGCCUGGUUCACACAGGCGUUGGCGUGGGUAGCAAAGUAGCUGGGAAUCCCAGUGACGCAGGUGUACGAGUCGCCCAGGAAC
......((((....(((((((.......(((((.((((.(((((.......))))).)))))))))(((((...((.((((((...)))))).))....)).)))))))))))))).... ( -45.50)
>consensus
CGCUUGCUGACUUCUCGGCUUAUCUCAAUCAUGUCCAGAGCCUGGUUCACACAGGCGUUGGCGUGGGUAGGAAAGUAGCUGGGAAUCCCAGUGACGCAGGUGUACGAAUCGCCCAGGAAC
.((((((((..(((((((((..(((...(((((.((((.(((((.......))))).)))))))))...)))....)))))))))...)))))).)).((((.......))))....... (-41.16 = -42.16 +   1.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:53 2006