Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,229,345 – 2,229,465 |
Length | 120 |
Max. P | 0.693476 |
Location | 2,229,345 – 2,229,465 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.33 |
Mean single sequence MFE | -46.10 |
Consensus MFE | -41.16 |
Energy contribution | -42.16 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.26 |
Structure conservation index | 0.89 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.693476 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2229345 120 - 23771897 CGCUUGCUGACUUCUCGGCUUAUCUCAAUCAUGUCCAGAGCCUGGUUCACACAGGCGUUGGCGUGGGUAGGAAAGUAGCUGGGAAUCCCAGUGACGCAGGUGUAUGAAUCGCCCAGGAAC .(((..(((..(((((((((..(((...(((((.((((.(((((.......))))).)))))))))...)))....)))))))))...)))..).)).((((.......))))....... ( -45.30) >DroSec_CAF1 10275 120 - 1 CGCUUGCUGACUUCUCGGCUUAUCUCAAUCAUGUCCAGGGCCUGUUUCACGCAGGCGUUGGCGUGGGUCGGAAAGUAGCUGGGAAUCCCAGUGACGCAGGUGUACGAAUCGCCCAGGAAC .(((..(((..(((((((((..(((...(((((.((((.((((((.....)))))).)))))))))...)))....)))))))))...)))..).)).((((.......))))....... ( -47.90) >DroSim_CAF1 10364 120 - 1 CGCUUGCUGACUUCUCGGCUUAUCUCAAUCAUGUCCAGAGCCUGGUUCACGCAGGCGUUGGCGUGGGUUGGAAAGUAGCUGGGAAUCCCAGUGACGCAGGUGUACGAAUCGCCCAGGAAC .(((..(((..(((((((((..((.((((((((.((((.((((((....).))))).))))))).)))))))....)))))))))...)))..).)).((((.......))))....... ( -44.90) >DroEre_CAF1 23300 120 - 1 CGCUGGCUGGCUUCUCGGCUUAUCUCAAUCAUGUCCAGAGCCUGGUUCACACAGGCGUUGGCGUGGGCAGAAAAGUAGCUGGGAAUCCCAGUGACGCAGGUGUACGAAUCGCCCAGGAAC .(((.(((((.(((((((((..(((...(((((.((((.(((((.......))))).)))))))))..))).....)))))))))..))))).).)).((((.......))))....... ( -46.90) >DroYak_CAF1 10797 120 - 1 CGCUGGCUGGCUUCGCGGCUUAUCUCAAUCAUGUCCAGAGCCUGGUUCACACAGGCGUUGGCGUGGGUAGCAAAGUAGCUGGGAAUCCCAGUGACGCAGGUGUACGAGUCGCCCAGGAAC ......((((....(((((((.......(((((.((((.(((((.......))))).)))))))))(((((...((.((((((...)))))).))....)).)))))))))))))).... ( -45.50) >consensus CGCUUGCUGACUUCUCGGCUUAUCUCAAUCAUGUCCAGAGCCUGGUUCACACAGGCGUUGGCGUGGGUAGGAAAGUAGCUGGGAAUCCCAGUGACGCAGGUGUACGAAUCGCCCAGGAAC .((((((((..(((((((((..(((...(((((.((((.(((((.......))))).)))))))))...)))....)))))))))...)))))).)).((((.......))))....... (-41.16 = -42.16 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:53 2006