Locus 74

Sequence ID 3L_DroMel_CAF1
Location 284,586 – 284,685
Length 99
Max. P 0.540378
window106

overview

Window 6

Location 284,586 – 284,685
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 78.59
Mean single sequence MFE -28.96
Consensus MFE -17.75
Energy contribution -17.65
Covariance contribution -0.10
Combinations/Pair 1.50
Mean z-score -1.42
Structure conservation index 0.61
SVM decision value 0.01
SVM RNA-class probability 0.540378
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 284586 99 - 23771897
CGGUUGUUGUUGUUGGCGAUGUCUUAGUUUUUGGGGCAUUGUUACCUACUGCCGCUGGUGAUAGCGGAGAGAUGUGCAAUUGAUUUUUGUUGUUAAAGU
(((((((......((((((((((((((...)))))))))))))).((.((.((((((....))))))))))....)))))))................. ( -27.50)
>DroVir_CAF1 79868 93 - 1
CCAUCGGACUUAUAGGCAUUGGCUUU------GAGUCCGCGUUGGCGAUUGCCCCUGUGUGCAAGGGCGUAACUUGCAAUUGAUUUCUAUUAUUUAAGU
.((.((((((((.((((....)))))------)))))))...))((((((((((((.......)))).)))).))))...................... ( -27.90)
>DroSec_CAF1 56764 99 - 1
CGGUCGGCGUUGUUGGCGAUGUCUUAGUUUUUGGGACAUUGUUACCUACUGCCGCUGGUGAUAGCGGAGAGAUGUGCAUUUGAUUUUUGUUGUUAAAGU
(((.((((((.(.((((((((((((((...)))))))))))))).).)).))))))).((((((((((((.............)))))))))))).... ( -32.32)
>DroSim_CAF1 52554 99 - 1
CGGUCGGCGUUGUUGGCGAUGUCUUAGUUUUUGGGACAUUGUUACCUACUGCCGCUGGUGAUAGCGGAGAGAUGUGCAUUUGAUUUUUGUUGUUAAAGU
(((.((((((.(.((((((((((((((...)))))))))))))).).)).))))))).((((((((((((.............)))))))))))).... ( -32.32)
>DroEre_CAF1 56242 99 - 1
CGGUCGGUGUUGUUGGCGAUGUCUUAGUUUUUGGCGGAUGGCUUCCUACUGCCGCUGGCGAUAGCGGGGAGAUGUGCAUCUGAUUUUUGUUGUUAAAGU
.((((((...(((..((.((.(((..(((.(((.(((.((((........))))))).))).)))..))).))))))).)))))).............. ( -26.40)
>DroYak_CAF1 53152 99 - 1
CGGUCGGUGUCGUUGGCGAUGUCUUGGCCUUUGGGUGAUUGCUUCCUACUGCCGCUGGCGACAACGGAGAGAUGUGCAUCUGAUUUUUGCUGUUAAAGU
((((((.((((((..(((......(.(((....))).)..((........)))))..)))))).))...((((....)))).......))))....... ( -27.30)
>consensus
CGGUCGGUGUUGUUGGCGAUGUCUUAGUUUUUGGGACAUUGUUACCUACUGCCGCUGGUGAUAGCGGAGAGAUGUGCAUUUGAUUUUUGUUGUUAAAGU
.((((((.......((((((((((((.....)))))))))))).....((.((((((....))))))))..........)))))).............. (-17.75 = -17.65 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:40 2006