Locus 7399

Sequence ID 3L_DroMel_CAF1
Location 19,893,248 – 19,893,342
Length 94
Max. P 0.569537
window12018

overview

Window 8

Location 19,893,248 – 19,893,342
Length 94
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 77.31
Mean single sequence MFE -28.04
Consensus MFE -11.52
Energy contribution -13.48
Covariance contribution 1.96
Combinations/Pair 1.24
Mean z-score -1.87
Structure conservation index 0.41
SVM decision value 0.07
SVM RNA-class probability 0.569537
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19893248 94 + 23771897
GGCAAAGAAUGGCUAAAAGAGCUGGCUGGAAAAUAAGUUCUCGAUGU--------------CAACGGCAGACUGUUGAGUUGACUGGCUACGGCUUUUGUCUUAGCCA
.........(((((((((((((((((..(...........(((((.(--------------((((((....)))))))))))))..))..))))))))...))))))) ( -29.70)
>DroSec_CAF1 28567 94 + 1
GGCAAAGAAUGGCUAAAAGAGCUGGCUGGAAAAUAAGUUUUCGAUGU--------------CAACGGCAGACUGUUGAGUUGACUGGCUACGGCUUUUGUCUUAGCCA
.........(((((((((((((((((..(...........(((((.(--------------((((((....)))))))))))))..))..))))))))...))))))) ( -29.70)
>DroEre_CAF1 27749 94 + 1
GACAAAGAAUGGCUAAAAGAGCUGGCUGGAAAAUAAGUUCUCGAUGU--------------CAGCGGCAGAAUGUUGAGUUGACCGGCUACGUCUUUUGUUUUAGCCA
.........((((((((((((((((((((...........(((((.(--------------(((((......)))))))))))))))))).).)))...))))))))) ( -27.40)
>DroYak_CAF1 28102 93 + 1
GGCAAGGAAUGGCUAA-AGAGGUGGCUGGAAAAUAAGUUCUCGAUGU--------------CAACGGCAGACUGUUGAGUUGACCGGCUACGUCUUUUGUCUUAGCCA
(((.((((......((-(((.((((((((...........(((((.(--------------((((((....)))))))))))))))))))).)))))..)))).))). ( -35.70)
>DroPer_CAF1 24824 96 + 1
AGCAGAGAAACAGUA-GAGAAACAGCAGAGAAAUAAGUUCUGGAUGUGUGCCUGCAAAUGACAACGACAGACUA-----------GUCUUAGCCUUUUGUCUUAGCCA
.((.((((....(((-(.(..(((.(((((.......)))))..)))...)))))..........(((......-----------)))...........)))).)).. ( -17.70)
>consensus
GGCAAAGAAUGGCUAAAAGAGCUGGCUGGAAAAUAAGUUCUCGAUGU______________CAACGGCAGACUGUUGAGUUGACCGGCUACGGCUUUUGUCUUAGCCA
(((.((((.....((((((...(((((((.......(((...)))................((((((....))))))......)))))))...)))))))))).))). (-11.52 = -13.48 +   1.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:59 2006