| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,871,233 – 19,871,323 |
| Length | 90 |
| Max. P | 0.677725 |
| Location | 19,871,233 – 19,871,323 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 78.07 |
| Mean single sequence MFE | -17.08 |
| Consensus MFE | -10.76 |
| Energy contribution | -11.36 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.677725 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19871233 90 + 23771897 AAUUUAGUAGACUGCAAAUUAAUUUGCGGUGAAAAGCCACCAAUUAAUGUUAAUGAAUAAGAAAUUCUAUAAUGCGAAACA---------------UUU-GGGAAU .(((((...(((.(((((....)))))((((......)))).......)))..)))))......(((((.((((.....))---------------)))-)))).. ( -14.90) >DroSec_CAF1 6485 81 + 1 AAUUUAUUAGACUGCAAAUGAAUUUGCGGUGAAAAGCCACCAAUUAAUGUUAAUGAAUAAGAAAUUCUAUGA------------------------UUU-GGGAAU .(((((((((...(((((....)))))((((......))))........)))))))))......(((((...------------------------..)-)))).. ( -16.00) >DroSim_CAF1 6494 81 + 1 AAUUUAUUAGACUGCAAAUGAAUUUGCGGUGAAAAGCCACCAAUUAAUGUUAAUGAAUAAGAAAUUCUAUAA------------------------UUU-GGGAAU .(((((((((...(((((....)))))((((......))))........)))))))))......(((((...------------------------..)-)))).. ( -16.00) >DroEre_CAF1 6416 106 + 1 AAUUUAUUAGACUCCAAAUGAAUUUGCGGUGAAAAGCCACCAAUUAAUGUUAAUGAAUAAGAAAUUGAGAAAUGGAAAACAUACUCGCAGACAUCAUUUCGGAAAU ............(((((((((.(((((((((......)))).........................(((..(((.....))).))))))))..)))))).)))... ( -21.70) >DroYak_CAF1 6420 102 + 1 AAUUUAUUAGACUCCAAAUGAAUUUGCGGUGAAAAGCCACCAAUUAAUGUUAAUGAAUAAGAAAUUGAGAAAUGUGAAACAUAUUCGCCUACAUAAUUUCGG---- .(((((((((....((((....)))).((((......))))........)))))))))..(((((((.(....(((((.....)))))...).)))))))..---- ( -16.80) >consensus AAUUUAUUAGACUGCAAAUGAAUUUGCGGUGAAAAGCCACCAAUUAAUGUUAAUGAAUAAGAAAUUCUAUAAUG__AAACA_______________UUU_GGGAAU .(((((((((...(((((....)))))((((......))))........)))))))))................................................ (-10.76 = -11.36 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:55 2006