Locus 7395

Sequence ID 3L_DroMel_CAF1
Location 19,868,284 – 19,868,379
Length 95
Max. P 0.684862
window12013

overview

Window 3

Location 19,868,284 – 19,868,379
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 86.05
Mean single sequence MFE -20.28
Consensus MFE -13.24
Energy contribution -14.80
Covariance contribution 1.56
Combinations/Pair 1.04
Mean z-score -2.20
Structure conservation index 0.65
SVM decision value 0.31
SVM RNA-class probability 0.684862
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19868284 95 + 23771897
CAGGCAUCGCUGUAAAAAUGCAUAUUUAAUCUCUACAAAUGGCUAUAUGUAUGCACAGCUUUUAUAGCCGCUAAUGGGAUUUAUGUGUUUGCAUU
..........(((((....((((((..((((((......((((((((.((.......))...)))))))).....)))))).))))))))))).. ( -21.40)
>DroSec_CAF1 3609 85 + 1
----------UGCAAAAAUGCAUAUUUAAUCUCUACAAAUGGCUAUAUGUGUGCACAGCUUUUAUAGCCGCUAAUGGGAUUUAUGUGUUUGCAUU
----------(((((....((((((..((((((......((((((((...((.....))...)))))))).....)))))).))))))))))).. ( -24.60)
>DroSim_CAF1 3576 85 + 1
----------UGCAAAAAUUCAUAUUUAAUCUCUACAAAUGGCUAUAUGUAUGCACAGCUUUUAUAGCCGCUAAUGGGAUUUAUGUGUUUGCAUU
----------((((((....(((((..((((((......((((((((.((.......))...)))))))).....)))))).))))))))))).. ( -22.20)
>DroEre_CAF1 3594 82 + 1
CAAG--------CAAAAAUGCAUAUUUAAUCUCUACAAAUGG-U----AUAUGUACAGCAUUUAUAGCCGCUAAUGGGAUUUAUGUGUUUGCAUU
...(--------(((....((((((..((((((......(((-(----..(((.....))).....)))).....)))))).))))))))))... ( -16.60)
>DroYak_CAF1 3496 82 + 1
CAAG--------CAGAAAUGCAUAUUUAAUCUCUACAAAUGG-U----AUAUGUACAGCAUUUAUAGCCGCUAAUGGGAUUUAUGUGUUUGCAUU
...(--------((((...(((((...((((((......(((-(----..(((.....))).....)))).....))))))))))).)))))... ( -16.60)
>consensus
CA_G______UGCAAAAAUGCAUAUUUAAUCUCUACAAAUGGCUAUAUGUAUGCACAGCUUUUAUAGCCGCUAAUGGGAUUUAUGUGUUUGCAUU
...............(((((((((...((((((......((((((((.....((...))...)))))))).....)))))))))))))))..... (-13.24 = -14.80 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:54 2006