Locus 7393

Sequence ID 3L_DroMel_CAF1
Location 19,860,353 – 19,860,456
Length 103
Max. P 0.543061
window12011

overview

Window 1

Location 19,860,353 – 19,860,456
Length 103
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 80.41
Mean single sequence MFE -39.72
Consensus MFE -25.98
Energy contribution -26.30
Covariance contribution 0.31
Combinations/Pair 1.34
Mean z-score -1.36
Structure conservation index 0.65
SVM decision value 0.02
SVM RNA-class probability 0.543061
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19860353 103 - 23771897
-----UGGCGCUGCCGUGGCCUGUGGAAAUGGUAGCUGGGCAGCGGGUAUGCCACCUAGAG---CGUUAGCGUUUUGCUGCGUACUGGGAUCGAAAACGCCGGGUAUAAAG
-----.(((((((((((..((...))..))))))))..((((.......)))).(((((.(---(((.(((.....))))))).))))).........))).......... ( -40.20)
>DroSec_CAF1 6319 98 - 1
-------GCGCUGCCGUGGCCUGUGGAAAUGGCAGCUGGGCAGCGGGUAUGCCACCUAGAG------UAGCAUUUUGCUGCGUACUGGGAUCGAAAACGCCGGGUAUAAAG
-------.(((((((((.(((.((....))))).))..)))))))..((((((.(((((.(------((((.....)))))...)))))..((.......))))))))... ( -39.70)
>DroSim_CAF1 5922 100 - 1
-----CGGCGCUGCCGUGGCCUGUGGAAAUGGCAGCUGGGCAGCGGGAAUGCCACCUAGAG------UAGCGUUUUGCUGCGUACUGGGAUCAAAAACGCCGGGUAUGAAG
-----((((((((((((..((...))..))))))))..((((.......)))).(((((.(------((((.....)))))...))))).........))))......... ( -42.60)
>DroYak_CAF1 6304 100 - 1
-----UGGCGCUGCUGUAGCCUGUGGAAAUGGCAGCUGGGCAGCGGGUAUGCCACCUAAAG------UAGCGUUUUGUUGCGCACUGGGAUCAAAAACGCCGGGUAUAAAG
-----.(((((((((((..((...))..))))))))((.((((((((.((((.((.....)------).)))))))))))).))..............))).......... ( -33.50)
>DroAna_CAF1 6149 100 - 1
-----UGGUGCUGCCGUGGCCUGUGGAAAUGGCAGCUGAGCGGCGGGAAUUCCUUCGAGUG------UCACGUUCUGUUUUGUGCUGGGAUCAUAGACCCCGGGAAUAAAA
-----....((((((((..((...))..)))))))).(((((...(..((((....)))).------.).)))))..((((((.(((((.((...)).)))))..)))))) ( -33.30)
>DroPer_CAF1 6930 111 - 1
UGUGGUGGCGCCGCAGUGGCCUGUGGGAACGGCAGCUGGGCUGCCGGUAUUCCACCGAGGGCCACGCUCGCAUUGUGCUGUGUGUUGGGAUCGUAGACGCCUGGUAUGAAG
(((((.....)))))(((((((((((((.(((((((...)))))))...))))))...))))))).......(..(((((.(((((.........))))).)))))..).. ( -49.00)
>consensus
_____UGGCGCUGCCGUGGCCUGUGGAAAUGGCAGCUGGGCAGCGGGUAUGCCACCUAGAG______UAGCGUUUUGCUGCGUACUGGGAUCAAAAACGCCGGGUAUAAAG
.........((((((((..((...))..))))))))...((((((((.((((.................))))))))))))(((((.((..........)).))))).... (-25.98 = -26.30 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:52 2006