| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,853,170 – 19,853,282 |
| Length | 112 |
| Max. P | 0.533329 |
| Location | 19,853,170 – 19,853,282 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.74 |
| Mean single sequence MFE | -27.85 |
| Consensus MFE | -15.32 |
| Energy contribution | -16.15 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.55 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.533329 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19853170 112 + 23771897 GGGUCAAAU--------GCAAGUUGAAUCCAAGUUACUACUGAUUUAGUUGCCCACACAGUUGUUGGCAACUGGGCUCGCAACUCCAUUCAUAACUCCCACGGCACCAAAUCCGCCACAC (((...(((--------(..(((((......(((....)))((((((((((((.(((....))).)))))))))).)).))))).)))).......)))..(((.........))).... ( -28.20) >DroSec_CAF1 36212 109 + 1 GGGUCAAAU--------GCAACUUGAAUUCAAGUUACUACUGAGUUAGUUGCCCACACAGUGGUUGGCAACCGGGCUCGCAACUCCAUU---AACUCCCACGGCACCAAAUCCGCCACAC (((...(((--------(.((((((....))))))......(((((.((((((.((......)).))))))..))))).......))))---....)))..(((.........))).... ( -30.60) >DroSim_CAF1 39865 109 + 1 GGGUCAAAU--------GCAAGUUGAAUUCAAGUUACUACUGAGUUAGUUGCCCACACAGUUGUGGGCAACCGGGCUCGCAACUCCAUU---AACUCCCACGGCACCAAAUCCGCCACAC (((...(((--------(..(((((......(((....)))(((((.((((((((((....))))))))))..))))).))))).))))---....)))..(((.........))).... ( -37.50) >DroEre_CAF1 36367 110 + 1 GUGUCGAAU-------CAGAGGCUGAAUCGAAGUUACUACUUUAUUAAUUGCCCACACAGUUGUUGGCAACUGGGCUCGCAAUUCCAUU---AACUCCCACGGCACUAAAUCCGCCACAC (((.((.((-------...((((((....(((((....)))))...((((((.....((((((....)))))).....)))))).....---........)))).))..)).)).))).. ( -25.90) >DroYak_CAF1 36492 117 + 1 GGGUCGAAGAGGUUUAGAGAAGCUAAAACGAAGUUACUACUUAAUUAAUUGCCCACACAGUUGUUGGCAACUGGGCUCGCAAUUCCAUU---AACUCCCACGGCACUAAGUCCGCCACAC ((((((....(((((....)))))....))).........(((((.((((((.....((((((....)))))).....))))))..)))---))..)))..(((.........))).... ( -25.20) >DroAna_CAF1 36616 90 + 1 GGGGAAAA------------------AAACUAUUUACUAUUUUAUUAAUUGCCUACGCAGUUGUCGUCAACUGGGAGUGCAAUUCCAUU---UACUCCCACAGGACUAU---------CA ...((...------------------...................(((((((....)))))))..(((...((((((((..........---))))))))...)))..)---------). ( -19.70) >consensus GGGUCAAAU________GCAAGUUGAAUCCAAGUUACUACUGAAUUAAUUGCCCACACAGUUGUUGGCAACUGGGCUCGCAACUCCAUU___AACUCCCACGGCACCAAAUCCGCCACAC (((............................(((....))).....((((((.....((((((....)))))).....))))))............)))..(((.........))).... (-15.32 = -16.15 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:47 2006