Locus 7387

Sequence ID 3L_DroMel_CAF1
Location 19,843,273 – 19,843,368
Length 95
Max. P 0.723057
window12001

overview

Window 1

Location 19,843,273 – 19,843,368
Length 95
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 71.08
Mean single sequence MFE -23.71
Consensus MFE -8.31
Energy contribution -8.23
Covariance contribution -0.08
Combinations/Pair 1.53
Mean z-score -2.00
Structure conservation index 0.35
SVM decision value 0.40
SVM RNA-class probability 0.723057
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19843273 95 + 23771897
UCUCGACUAGCUCCAAAAGGGGCACACUAUUUUUCUGGUGAUACCAUUGCACAGCCGAUGAUAACAC-------UGCAUAUACGGUAACACCACAAU---A-AGUG
.........(((((....))))).((((....((.(((((.((((..((((................-------)))).....)))).))))).)).---.-)))) ( -22.99)
>DroPse_CAF1 27992 102 + 1
UUCGGCCGUUUUCAAAUACGGUCCUACUGUUAU---CGCAA-ACGGUAACACCGCGACUGGUAUUGCGUCCGUGUUCGUAUACGGCCAUACUGCGACUAUACAAUU
...((((((...(.(((((((......((((((---((...-.)))))))).(((((......))))).))))))).)...))))))................... ( -33.00)
>DroSec_CAF1 26966 88 + 1
UCUCGACGAGCUCCAAAAGGGGCACACUAUUUUUCAGGUGAUACC-------AUCCAACGAUAACAC-------UGCAUAUACGGUAACACCACAAU---A-AGUA
.....((..(((((....))))).............((((.((((-------(((....))).....-------.(......))))).)))).....---.-.)). ( -17.50)
>DroSim_CAF1 30297 95 + 1
UCUCGACGAGCUCCAAAAGGGGCACACUAUUUUUCUGGUGAUACCGUCGCACAUCCAACGAUAACAC-------UGCAUAUACGGUAACACCACAAU---A-AGUA
.........(((((....)))))....(((((...(((((.((((((.(((.(((....))).....-------)))....)))))).)))))....---)-)))) ( -23.40)
>DroEre_CAF1 27124 95 + 1
UCUUGACAAGCCGUAAUAGGGGCACACUAUUUUUCUGGUGAUACCAUCGCACAUCGUAUGAUAACAG-------UACAUGUACGGUCACACUACAAU---A-AGUG
...((((..(((........))).(((((......))))).......((.((((.((((.......)-------))))))).))))))((((.....---.-)))) ( -20.30)
>DroYak_CAF1 27133 95 + 1
UCUCAACGAGCCCCAAUAGGGGCACACUAUUUUUCUGGUGAUACCAUAACACAUCGAGUGAUAACAC-------UACUUAUACGGGCACACCACAAU---A-AGUG
......((((((((....))))).(((((......))))).............)))((((....)))-------)((((((...((....))...))---)-))). ( -25.10)
>consensus
UCUCGACGAGCUCCAAAAGGGGCACACUAUUUUUCUGGUGAUACCAUAGCACAUCCAAUGAUAACAC_______UGCAUAUACGGUAACACCACAAU___A_AGUG
..(((....(((((....))))).(((((......)))))..................)))......................((.....)).............. ( -8.31 =  -8.23 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:42 2006