Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,829,999 – 19,830,090 |
Length | 91 |
Max. P | 0.998932 |
Location | 19,829,999 – 19,830,090 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 94.51 |
Mean single sequence MFE | -17.74 |
Consensus MFE | -17.80 |
Energy contribution | -17.64 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.81 |
Structure conservation index | 1.00 |
SVM decision value | 3.29 |
SVM RNA-class probability | 0.998932 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19829999 91 + 23771897 UCUAUUUCUAUAUUAUACGUACGCUUUACGCGUAUGCGACACUUUUACUCAAGACAUUUUUGGUCAAGUGGAUUUUGUUGUACAUUCAUUU ..................((((((.....))))))((((((..((((((...(((.......))).))))))...)))))).......... ( -17.70) >DroSec_CAF1 13679 91 + 1 UUUAUUUCUAUAUUAUACGUACGCUUUACGCGUAUGCGACACUUUUACUCAAGACAUUUUUGGUCAAGUGGAUUUUGUUGUACUUUCAUUU ..................((((((.....))))))((((((..((((((...(((.......))).))))))...)))))).......... ( -17.70) >DroSim_CAF1 16923 91 + 1 UUUAUUUCUAUAUUAUACGUACGCUUUACGCGUAUGCGACACUUUUACUCAAGACAUUUUUGGUCAAGUGGAUUUUGUUGUACUUUCAUUU ..................((((((.....))))))((((((..((((((...(((.......))).))))))...)))))).......... ( -17.70) >DroEre_CAF1 13663 91 + 1 UCUAUAUAUAAAAUAUACGUACGCUCUGCGCGUAUACGACACUUUUACUCAAGACAUUUUUGGUCAAGUGGAUUUUGUUGUACUUUUAUUU .......((((((.....((((((.....))))))((((((..((((((...(((.......))).))))))...))))))..)))))).. ( -17.90) >DroYak_CAF1 13560 91 + 1 UCUAUAUCUAAAUUAUACGUACGCUCUACGCGUAUGCGACACUUUUACUCAAGACAUUUUUGGUCAAGUGGAUUUUGUUGUACUUUUAUUU ..................((((((.....))))))((((((..((((((...(((.......))).))))))...)))))).......... ( -17.70) >consensus UCUAUUUCUAUAUUAUACGUACGCUUUACGCGUAUGCGACACUUUUACUCAAGACAUUUUUGGUCAAGUGGAUUUUGUUGUACUUUCAUUU ..................((((((.....))))))((((((..((((((...(((.......))).))))))...)))))).......... (-17.80 = -17.64 + -0.16)
Location | 19,829,999 – 19,830,090 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 94.51 |
Mean single sequence MFE | -13.90 |
Consensus MFE | -13.28 |
Energy contribution | -13.28 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.06 |
Structure conservation index | 0.96 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.590669 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19829999 91 - 23771897 AAAUGAAUGUACAACAAAAUCCACUUGACCAAAAAUGUCUUGAGUAAAAGUGUCGCAUACGCGUAAAGCGUACGUAUAAUAUAGAAAUAGA .......(((((.........(((((.(((((.......))).))..))))).....(((((.....))))).)))))............. ( -14.40) >DroSec_CAF1 13679 91 - 1 AAAUGAAAGUACAACAAAAUCCACUUGACCAAAAAUGUCUUGAGUAAAAGUGUCGCAUACGCGUAAAGCGUACGUAUAAUAUAGAAAUAAA ........((((.........(((((.(((((.......))).))..))))).....(((((.....))))).)))).............. ( -13.30) >DroSim_CAF1 16923 91 - 1 AAAUGAAAGUACAACAAAAUCCACUUGACCAAAAAUGUCUUGAGUAAAAGUGUCGCAUACGCGUAAAGCGUACGUAUAAUAUAGAAAUAAA ........((((.........(((((.(((((.......))).))..))))).....(((((.....))))).)))).............. ( -13.30) >DroEre_CAF1 13663 91 - 1 AAAUAAAAGUACAACAAAAUCCACUUGACCAAAAAUGUCUUGAGUAAAAGUGUCGUAUACGCGCAGAGCGUACGUAUAUUUUAUAUAUAGA ..((((((((((.........(((((.(((((.......))).))..))))).....(((((.....))))).)))).))))))....... ( -15.20) >DroYak_CAF1 13560 91 - 1 AAAUAAAAGUACAACAAAAUCCACUUGACCAAAAAUGUCUUGAGUAAAAGUGUCGCAUACGCGUAGAGCGUACGUAUAAUUUAGAUAUAGA ........((((.........(((((.(((((.......))).))..))))).....(((((.....))))).)))).............. ( -13.30) >consensus AAAUGAAAGUACAACAAAAUCCACUUGACCAAAAAUGUCUUGAGUAAAAGUGUCGCAUACGCGUAAAGCGUACGUAUAAUAUAGAAAUAGA ........((((.........(((((.(((((.......))).))..))))).....(((((.....))))).)))).............. (-13.28 = -13.28 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:36 2006