Locus 7383

Sequence ID 3L_DroMel_CAF1
Location 19,824,362 – 19,824,475
Length 113
Max. P 0.564940
window11992

overview

Window 2

Location 19,824,362 – 19,824,475
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 81.04
Mean single sequence MFE -39.44
Consensus MFE -22.51
Energy contribution -23.95
Covariance contribution 1.44
Combinations/Pair 1.03
Mean z-score -1.87
Structure conservation index 0.57
SVM decision value 0.06
SVM RNA-class probability 0.564940
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19824362 113 - 23771897
GGCCAGCACAAAGUGUCCUCGCUGCUGCCGACUGCACGUGCCCGAUGUCCU-------GCAUCCAGGACACUCAUACACAUACAUAUUACAUAUGUGUGUGGUGGGUGGGACUGGGGAUU
(((.((((....(((....))))))))))..((.((.((.(((...(((((-------(....))))))((((((.(((((((((((...)))))))))))))))))))))))).))... ( -46.40)
>DroSec_CAF1 8068 104 - 1
GGCCAGCACAAAGUGUCCUCGCUGCUGCCGACUGCACGUGCCCGAUGUCCU-------GCAUCCAGGACACUCAUGCACAUACAUAUGU--------GGU-GUGGGUGGGACUGGGCAUU
(((.((((....(((....))))))))))........(((((((.((((((-------(....)))))))(((((.(((((((....))--------.))-))).)))))..))))))). ( -43.30)
>DroSim_CAF1 11280 112 - 1
GGCCAGCACAAAGUGUCCUCGCUGCUGCCGACUGCACGUGCCCGAUGUCCUCCAGGAUGCAUCCAGGACACUCAUGCACAUGCAUAUGA--------UGUGGUGGGUGGGACUGGGCAUU
(((.((((....(((....))))))))))........(((((((..(((((((.(((....))).)))(((((((.(((((.......)--------)))))))))))))))))))))). ( -44.30)
>DroEre_CAF1 8033 94 - 1
GGCCAGCACAAAGUGUCCUCGCUGCUGCCGACUGCACGUGCCCGAUGUCCU-------GCAUUCAGGACACUCAUAUACCU----AUGU--------A-------GUGGGAAUGGGGAUU
(((.((((....(((....))))))))))........((.(((((((((((-------(....))))))).)).....(((----((..--------.-------)))))...))).)). ( -30.00)
>DroYak_CAF1 7987 91 - 1
GGCCAGC---AAGUGUCCCCGCUGCUGCCGACUGCACGUACCCGAUGUCCU-------GCAUCCAGGACACUCAUAUACAU----AUGU--------A-------CUGGUACUGGGGACU
(((.(((---(.(((....))))))))))..((.((.(((((.((((((((-------(....))))))).))...(((..----..))--------)-------..))))))).))... ( -33.20)
>consensus
GGCCAGCACAAAGUGUCCUCGCUGCUGCCGACUGCACGUGCCCGAUGUCCU_______GCAUCCAGGACACUCAUACACAU_CAUAUGU________AGU_GUGGGUGGGACUGGGGAUU
(((.(((....((((....))))))))))........((.((((.((((((.............))))))(((((.(((......................))).)))))..)))).)). (-22.51 = -23.95 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:34 2006