Locus 7380

Sequence ID 3L_DroMel_CAF1
Location 19,815,494 – 19,815,587
Length 93
Max. P 0.546610
window11985

overview

Window 5

Location 19,815,494 – 19,815,587
Length 93
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 93.98
Mean single sequence MFE -14.68
Consensus MFE -14.11
Energy contribution -13.83
Covariance contribution -0.28
Combinations/Pair 1.13
Mean z-score -0.78
Structure conservation index 0.96
SVM decision value 0.03
SVM RNA-class probability 0.546610
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19815494 93 - 23771897
CAAAUACAUAAUCAUUAGACAUAUUGAAGUCAUAAUUGAUAAGCGCAAUACUAAUUUCGAACCGAAUCUGCUCGGCGCGUCACACA-AGCCAAU-------
.................(((........((((....))))..((((.........((((...))))........))))))).....-.......------- ( -14.43)
>DroSec_CAF1 7882 94 - 1
CAAAUACAUAAUCAUUAGACAUAUUGAAGUCAUAAUUGAUAAGCGCAAUACUAAUUUCGAACCGAAUCUGCUCGGCGCGUCACACA-AGCCAAUC------
.................(((........((((....))))..((((.........((((...))))........))))))).....-........------ ( -14.43)
>DroSim_CAF1 7895 93 - 1
CAAAUACAUAAUCAUUAGACAUAUUGAAGUCAUAAUUGAUAAGCGCAAUACUAAUUUCGAACCGAAUCUGCUCGGCGCGUCACAAA-AGCCAAU-------
.................(((........((((....))))..((((.........((((...))))........))))))).....-.......------- ( -14.43)
>DroEre_CAF1 7844 94 - 1
CAAAUACAUAAUCAUUAGACAUAUUGAAGUCAUAAUUGAUAAGCGCAAUACUAAUUUCGAACCGAAUCUGCUCGGCGCGUCACACAAAGCCAAU-------
.................(((........((((....))))..((((.........((((...))))........))))))).............------- ( -14.43)
>DroYak_CAF1 7840 94 - 1
CAAAUACAUAAUCAUUAGACAUAUUGAAGUCAUAAUUGAUAAGCGCAAUACUAAUUUCGAACCGAAUAUGCUCGGCGCGUCACACAAAGCCAAU-------
.................(((........((((....))))..((((.........((((...))))........))))))).............------- ( -14.43)
>DroAna_CAF1 10220 101 - 1
CAAAUACAUAAUCAUUAGACAUAUUGAAGUCAUAUCUGAUAAGCGCAAUACUAAUUUCGAACCGAGUCAGCUCGGCGCGUUACACGAAGCCAAUCUAUCAA
.................(((........))).....((((((((((....(.......)..(((((....))))).)))))....((......))))))). ( -15.90)
>consensus
CAAAUACAUAAUCAUUAGACAUAUUGAAGUCAUAAUUGAUAAGCGCAAUACUAAUUUCGAACCGAAUCUGCUCGGCGCGUCACACA_AGCCAAU_______
.................(((........((((....))))..((((.........((((...))))........))))))).................... (-14.11 = -13.83 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:28 2006