| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,813,048 – 19,813,162 |
| Length | 114 |
| Max. P | 0.584675 |
| Location | 19,813,048 – 19,813,162 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.99 |
| Mean single sequence MFE | -37.12 |
| Consensus MFE | -18.98 |
| Energy contribution | -18.34 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.45 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.584675 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19813048 114 + 23771897 ---ACCAGUA---GCGGGGUCUACUCUCGUCGCUCCUCCCAGCCGCCGCACAAGGCGGGCAAGUAUUUGGUAGCCGUACAUCGAAAGAUAACGCGGCAUGACAGCUACUUCCUGUCCUAC ---(((((..---((((((.....))))))..).........(((((......))))).........)))).(((((..(((....)))...)))))..(((((.......))))).... ( -39.30) >DroVir_CAF1 7534 114 + 1 CAAACUAGCA---GCGGUGUCUAUUCGCGCCGCUCCUCGCAGC---CCUACAAGGUGGGCAAAUAUCUGGUGGCUGUACAUCGUAAAAUCACGCGCCACGACAGCUACUUCCUUUCCUAU .......(((---(((((((......))))))))....)).((---((........))))........(((((((((....(((........))).....)))))))))........... ( -35.90) >DroGri_CAF1 9604 114 + 1 CAAACUAGCA---GUGGCGUCUACUCGCGCCGCUCCUCGCAGC---CCUACAAAGUGGGCAAAUACCUAGUUGCAGUGCAUCGCAAGAUCACGCGCCACGACAGCUACUUCCUUUCGUAU ..((((((.(---(((((((......)))))))).......((---((........))))......))))))((.(((.(((....))))))))...((((.((.......)).)))).. ( -38.10) >DroWil_CAF1 34714 114 + 1 ---ACCAGUAGCAGCGGUGUCUAUUCGCGUCGCUCCUCGCAAC---CCCACAAAGUGGGCAAAUAUUUAGUGGCUGUGCAUCGUAAGAUCACACGUCACGACAGUUACUUCCUAUCCUAU ---...((((((.((((.......))))(((((.....))...---(((((...)))))..........(((((((((.(((....))))))).)))))))).))))))........... ( -36.60) >DroMoj_CAF1 7293 114 + 1 CAAACCACCA---GCGGCGUGUACUCGCGCCGCUCCUCGCAGC---CCUACAAGGUGGGCAAAUAUCUUGUGGCUGUCCAUCGCAAAAUUACGCGCCACGACAGCUACUUCCUCUCCUAC .........(---((((((((....))))))))).......((---((........)))).........(((((((((...(((........)))....)))))))))............ ( -42.70) >DroAna_CAF1 7690 111 + 1 ---ACCAGCA---GUGGCGUCUACUCCCGUCGCUCCUCGCAGC---CGCACAAGGCCGGCAAGUAUCUAGUAGCCGUGCAUCGGAAGAUCACCCGCCAUGACAGCUACUUCCUAUCCUAC ---...(((.---((((((.(((((......((.....)).((---(((.....).))))........)))))..(((.(((....)))))).))))))....))).............. ( -30.10) >consensus ___ACCAGCA___GCGGCGUCUACUCGCGCCGCUCCUCGCAGC___CCCACAAGGUGGGCAAAUAUCUAGUGGCUGUGCAUCGCAAGAUCACGCGCCACGACAGCUACUUCCUAUCCUAC .............((((((........))))))..(((((..............))))).........((((((.((....(((........))).....)).))))))........... (-18.98 = -18.34 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:27 2006