Locus 7378

Sequence ID 3L_DroMel_CAF1
Location 19,807,733 – 19,807,840
Length 107
Max. P 0.715559
window11983

overview

Window 3

Location 19,807,733 – 19,807,840
Length 107
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.78
Mean single sequence MFE -41.71
Consensus MFE -28.89
Energy contribution -29.70
Covariance contribution 0.81
Combinations/Pair 1.49
Mean z-score -1.59
Structure conservation index 0.69
SVM decision value 0.39
SVM RNA-class probability 0.715559
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19807733 107 + 23771897
-------------UGUUAUAUGCCGCCUGUGGUGGCACCCAGCGUGGCAUCUCCUUUAACGACCUGCUCUGCGGUCUGGUCUUGAUAACUCGUGGUACCCAAGCGGAGAAAACCAAGUGA
-------------.......(((((((((.((.....))))).))))))(((((......((((.((...)))))).((((((((....))).)).))).....)))))........... ( -31.50)
>DroVir_CAF1 2177 120 + 1
AAGAUCACGGACAUGCUGUAUGCCGCCUGUGGUGGUACACAGCGCGGCAUAUCCUUCAAGGACCUACUGUGCGGCCUGGUGCUGAUCACACGCGGCACACAGGAGGAGAAAACCAAGUGA
....((((.....(.((((.((((((.(((((((((((.(((.((.((((((((.....))).....))))).)))))))))).)))))).)))))).)))).)((......))..)))) ( -51.50)
>DroGri_CAF1 3953 120 + 1
AAGAUCACGGACAUGUUGUAUGUCGCCUGUGGUGGCACACAGCGCGGCAUAUCCUUCAAGGACCUGCUAUGCGGCCUGGUGCUGAUUACACGCGGCACCCAGGAGGAGAAAACCAAGUGA
....((((((........(((((((((((((......))))).))))))))((((((.(((.((.((...)))))))(((((((........)))))))..)))))).....))..)))) ( -48.20)
>DroWil_CAF1 28891 120 + 1
AAGAUUACGGAUAUGCUAUAUGCCGCUUGCGGUGGCACUCAGCGUGGCAUAACCUUUAAGGAUCUGCUCUGUGGCCUGGUGUUAAUCACACGCGGCAGUCAGGAUGAGAAAACCAAGUGA
....((((((.((((((((.((((((.....))))))......)))))))).)).......((((...((((.((...(((.....)))..)).))))...))))...........)))) ( -35.90)
>DroMoj_CAF1 1987 120 + 1
AAGAUUACGGACAUGCUCUAUGCUGCCUGUGGCGGCACACAGCGCGGCAUAUCCUUUAAGGACCUGCUGUGCGGCCUGGUGCUAAUCACUCGUGGCACUCAGGAGGAGAAAACAAAGUAA
....((((.......((((.(((((((...)))))))....((((((((..(((.....)))..))))))))..((((((((((........)))))).)))).))))........)))) ( -46.96)
>DroAna_CAF1 2441 120 + 1
AAGAUCACGGACAUGCUGUAUGCAGCCUGCGGUGGAUCGCAGCGUGGAAUUUCCUUUAAGGACCUGCUCUGCGGCUUAGUCCUCAUCACCAGAGGCACUCAGGAGGAGAAAACAAAGUGA
....((((((((..((((((.((((.(..((.((.....)).))..)....(((.....))).))))..))))))...))))((..(.((.(((...))).)).)..)).......)))) ( -36.20)
>consensus
AAGAUCACGGACAUGCUGUAUGCCGCCUGUGGUGGCACACAGCGCGGCAUAUCCUUUAAGGACCUGCUCUGCGGCCUGGUGCUGAUCACACGCGGCACUCAGGAGGAGAAAACCAAGUGA
....((((..........(((((((((((((......))))).))))))))((((((.(((.((........)))))(((((((........)))))))..)))))).........)))) (-28.89 = -29.70 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:26 2006