Locus 7377

Sequence ID 3L_DroMel_CAF1
Location 19,807,208 – 19,807,322
Length 114
Max. P 0.917417
window11982

overview

Window 2

Location 19,807,208 – 19,807,322
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 77.25
Mean single sequence MFE -22.96
Consensus MFE -11.08
Energy contribution -11.76
Covariance contribution 0.68
Combinations/Pair 1.16
Mean z-score -2.19
Structure conservation index 0.48
SVM decision value 1.11
SVM RNA-class probability 0.917417
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19807208 114 + 23771897
UAAUAUUCAUGUUACCUUCUAUUGGUUUGUG----GGUA-ACCUUUUUGCACUUCAGGUAAUUAGUGAAAAAUCAAUUACUGAUAAUGGUUAAUUAGGUAACAACGAAUC-UAAUACCAU
...((((((((..(((.......))).))))----))))-((((...........)))).((((((((........)))))))).(((((..(((((((........)))-))))))))) ( -22.10)
>DroSec_CAF1 15736 118 + 1
UAAUAUCCAUGUUACCUUCUAUUGCACCGCUACCCACAA-ACCUU-UUGCUUUUUAGGUAAUUAGUGAAAAAUCAAUUACUGAUAAUGGUUAACUAGGUAACAACGGAUCUUAAUACCAU
(((.((((.((((((((....(((.((((..........-((((.-.........)))).((((((((........))))))))..)))))))..))))))))..)))).)))....... ( -24.60)
>DroSim_CAF1 36765 119 + 1
UAAUAUCCAUGUUACCUUCUAUUGCACCGCUACCCACAA-ACCUUUUUGCAUUUCAGGUAAUUAGUGAAAAAUCAAUUACUGAUAAUGGUUAAUUAGGUAACAACGAAUCUUAAUACCAU
.........((((((((...((((.((((..........-((((...........)))).((((((((........))))))))..)))))))).))))))))................. ( -21.90)
>DroEre_CAF1 9702 106 + 1
-----------UUACCUCCUAUUGCA-CCUGAA-CAC-UUACACUUUUUCACAUCGAGUAAUUGGUGAAAAGUCAUUUACUGAUAAUAGUUAAUUAGGUAACAGGGGAUCUUAAUACCAU
-----------....(((((.((((.-......-...-....((((((...((((((....))))))))))))......(((((........))))))))).)))))............. ( -20.30)
>DroYak_CAF1 18242 115 + 1
U---AUUCACAUUCCCCCUCAUUGCAACCCUAC-CACAAUUCACUUUUGCACAUCGAGUAAUUGGUGAAAAAUCAAUUACUGAUAAUGGUUAAUUAGGUAACAGGGGAUCUUAA-ACCAU
.---..........(((((..((((......((-(((((.......)))...(((.((((((((((.....)))))))))))))..)))).......)))).))))).......-..... ( -25.92)
>consensus
UAAUAUCCAUGUUACCUUCUAUUGCACCGCUAC_CACAA_ACCUUUUUGCACUUCAGGUAAUUAGUGAAAAAUCAAUUACUGAUAAUGGUUAAUUAGGUAACAACGGAUCUUAAUACCAU
.........((((((((.((((((......................((((.......))))(((((((........)))))))))))))......))))))))................. (-11.08 = -11.76 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:25 2006