| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,802,324 – 19,802,429 |
| Length | 105 |
| Max. P | 0.742735 |
| Location | 19,802,324 – 19,802,429 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 80.67 |
| Mean single sequence MFE | -19.38 |
| Consensus MFE | -14.02 |
| Energy contribution | -15.35 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.742735 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19802324 105 + 23771897 ACCACCAUAAACCACUACCGUG---UAGUCGUUGCCACCAUGCCGCUUCAGUGCCGAGCGCACGUUGCCACGUCAAAGCAGACUGCACCUGGACAACCAACUGUCCUU ...................(((---(((((..(((....(((..((....((((.....))))...))..)))....)))))))))))..(((((......))))).. ( -28.10) >DroVir_CAF1 4295 91 + 1 ---------CA---UUAUC--A---UAAUUAUUACCACCAUACCGCAUCAGUGCCACACGCACAUUGCCACGUCAAAGCAGACUGCAUCUGGACAGCCAACUGUCCUU ---------..---.....--.---...................(((...((((.....))))........(((......))))))....((((((....)))))).. ( -19.00) >DroGri_CAF1 9638 94 + 1 ---------CA---UUAUC--AGAAUUAUUAUUACCACCAUGCCGCAUCAGUGCCACACGCACAUUGCCACGUCAAAGCAGACUGCAUCUGGACAGCCAACUGUCCUU ---------..---.....--..................((((.(((...((((.....))))..)))...(((......))).))))..((((((....)))))).. ( -21.00) >DroWil_CAF1 4389 90 + 1 A-------------UUAUC--A---GAAUUAUGACCACCUUGCCGCAUCAGUGCCAAUUGAACAUUGCCACGUCAAAGCAGACUGCAUCUGGACAACCAACUAUCCUU .-------------...((--(---......)))(((...(((.......(((.((((.....)))).)))(((......))).)))..)))................ ( -12.80) >DroMoj_CAF1 13664 91 + 1 ---------CA---UUAUC--A---UUAUUAUUUCCACCAUGCCGCAUCAGUGCCACACGCACAUUGCCACGUCAAAGCAAACUGCAUCUGGACAGCCAACUAUCCUU ---------..---.....--.---........((((..((((.......((((.....)))).((((.........))))...)))).))))............... ( -13.30) >DroAna_CAF1 3539 88 + 1 ------------CACUAUCG--------UUGUUUCCACCAUGCCGCAUCAGUGCCGAGCGCACGUUGCCACGUCAAAGCAGACUGCAUCUGGACAGCCAACUGUCCUU ------------........--------...........((((.(((...((((.....))))..)))...(((......))).))))..((((((....)))))).. ( -22.10) >consensus _________CA___UUAUC__A___UAAUUAUUACCACCAUGCCGCAUCAGUGCCAAACGCACAUUGCCACGUCAAAGCAGACUGCAUCUGGACAGCCAACUGUCCUU ........................................(((.(((...((((.....))))..)))...(((......))).)))...((((((....)))))).. (-14.02 = -15.35 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:20 2006