Locus 7373

Sequence ID 3L_DroMel_CAF1
Location 19,795,593 – 19,795,713
Length 120
Max. P 0.590664
window11977

overview

Window 7

Location 19,795,593 – 19,795,713
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 78.70
Mean single sequence MFE -28.37
Consensus MFE -16.72
Energy contribution -16.73
Covariance contribution 0.01
Combinations/Pair 1.23
Mean z-score -1.89
Structure conservation index 0.59
SVM decision value 0.11
SVM RNA-class probability 0.590664
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19795593 120 + 23771897
GAACAUCAUUAAAUAAAACGGGACCUAGGCCGGUGAAAAAUUAUAAAGGGGGCGGGGCUUGCCACAGUAGGACAGUAUCUUUCAAAGACAGCAUCCCCUCUUUCAGAACUAUCUUUUAUU
...........((((((((.((.(....))).)).............(..((.(((((((((....)))))...((.(((.....)))..))..)))).))..)..........)))))) ( -21.30)
>DroSec_CAF1 3349 98 + 1
GACCAUCAUUAAAUAAAACGGGACAUAGGCCGGAAAAAAAUUCUGGAGGGGGCUGG---------------------UCUUCCAAAGACAGCAUGCCCUCUUUCAGAAC-ACCCGUUAUU
................((((((.......((((((.....))))))(((((((..(---------------------(((.....)))).....)))))))........-.))))))... ( -30.90)
>DroSim_CAF1 10376 98 + 1
GACCAUCAUUAAAUAAAACGGGACCUAGGCCGGAAAAAAAUUCUGGAGGAGGCGGG---------------------UCUUCCAAAGACAGCAUCCCCUCUUUCAGAAC-ACCCGUUAUU
................((((((.((......)).......((((((((((((.(((---------------------(((((....)).)).)))))))))))))))).-.))))))... ( -32.90)
>consensus
GACCAUCAUUAAAUAAAACGGGACCUAGGCCGGAAAAAAAUUCUGGAGGGGGCGGG_____________________UCUUCCAAAGACAGCAUCCCCUCUUUCAGAAC_ACCCGUUAUU
................((((((.((......)).......((((((((((((.((......................................)).))))))))))))...))))))... (-16.72 = -16.73 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:19 2006