Locus 7371

Sequence ID 3L_DroMel_CAF1
Location 19,777,259 – 19,777,368
Length 109
Max. P 0.817318
window11975

overview

Window 5

Location 19,777,259 – 19,777,368
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 85.69
Mean single sequence MFE -36.48
Consensus MFE -33.00
Energy contribution -31.96
Covariance contribution -1.04
Combinations/Pair 1.40
Mean z-score -1.63
Structure conservation index 0.90
SVM decision value 0.67
SVM RNA-class probability 0.817318
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19777259 109 - 23771897
AUAUAAUAUCAAACACUCGACUUACACUGCAUGUUCUGCUGAUGCGGAGCGUAUUGGUUGUGGUACGGUUGUGGCGGCUGCUGCUGCUGCGGCGCAUUGUGCCACUGUU
...........((((...............(((((((((....))))))))).......((((((((((((..(((((....)))))..))))....)))))))))))) ( -39.90)
>DroSec_CAF1 1528 109 - 1
AUAGAAUAUCAAAAACUCGACUUACACUGCAUGUUCUGCUGAUGCGGAGCGUAUUGGUUGUGAUACGGUUGUGGCGGCUGCUGCUGCUGUGGCGCAUUGUGCCACUGUU
.............(((.((..(((((((..(((((((((....)))))))))...)).)))))..)))))..((((((....))))))(((((((...))))))).... ( -37.70)
>DroEre_CAF1 1577 109 - 1
AGAAAAUAUCAAACAUUCGACUUACACUGCAUGUUCUGCUGAUGCGGAGCGUAUUGGUUGUGGUAUGGUUGUGGCGGCUGCUGCUGCUGCGGCGCAUUGUGCCACUGUU
...........((((...............(((((((((....))))))))).......((((((((((((..(((((....)))))..)))).)))...))))))))) ( -38.00)
>DroWil_CAF1 1460 105 - 1
A----AAAGUUGACGCUUGACUCACUUUGCAUAUUCUGCUGAUGUGGAUUAUAUUGAUUGUGAUAUUGCUGCGGGGUCUGCUGCUGUUGCGGUGCAUUAUGCCAUUGCU
.----..(((....((.(((..((((..(((.(((((((....(..(((((((.....)))))).)..).))))))).))).((....))))))..))).))....))) ( -24.30)
>DroYak_CAF1 1570 109 - 1
AUAAAAUAUCAAACAUUCGACUUACACUGCAUGUUCUGCUGAUGCGGAGCGUAUUGGUUGUGGUACGGUUGCGGCGGCUGCUGCUGCUGCGGCGCAUUGUGCCACUGUU
...........((((...............(((((((((....))))))))).......(((((((((((((((((((....)))))))))))....)))))))))))) ( -42.50)
>consensus
AUAAAAUAUCAAACACUCGACUUACACUGCAUGUUCUGCUGAUGCGGAGCGUAUUGGUUGUGGUACGGUUGUGGCGGCUGCUGCUGCUGCGGCGCAUUGUGCCACUGUU
............................(((((((((((....))))))))).......(((((((((((((((((((....)))))))))))....)))))))).)). (-33.00 = -31.96 +  -1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:17 2006