| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,774,866 – 19,774,973 |
| Length | 107 |
| Max. P | 0.777734 |
| Location | 19,774,866 – 19,774,973 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 78.00 |
| Mean single sequence MFE | -37.62 |
| Consensus MFE | -20.84 |
| Energy contribution | -20.57 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.777734 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19774866 107 - 23771897 UUGCUCUGCGUUCUUUAGGCAUCUUUCCAGAACGUGUUCCUGGGCGCAGAUCUGCUUGAGCACCGCCUGGGCGAACUCCAACAGCGAGAUCUGCUCCAUUCCU---------CCGA .......(((((((...((.......))))))))).....((((.(((((((((((.(((...(((....)))..)))....))).)))))))))))).....---------.... ( -33.20) >DroPse_CAF1 21361 107 - 1 CCCCUCGGCAUUCUUCAGGCACCGUUCAAGCACGUGCUCUUGGGCGCAGAUCUGCUUGAGCACGGCCUGAGCGAAUUCUAGUAGUGAGAUCUGCUCUAGCCCG---------CCAA ......((((((((((((((...(((((((((.(((((....))))).....)))))))))...))))))).)))).((((.(((.......)))))))...)---------)).. ( -42.60) >DroGri_CAF1 29641 116 - 1 CUGCUCCGCAUUCUUCAAGCACCGCUCCAGGACAUGCUCCUGGGCGCAAAUCUGCUUGAGCACUGCCUGGGCAAAUUCGAGCAGUGAGAUUUGCUCGUUACCAACCAGACUGCUGC ..((...(((.(.((((((((.(((.((((((.....)))))))))......)))))))).).)))((((.......(((((((......))))))).......))))...))... ( -42.24) >DroWil_CAF1 24126 107 - 1 UUGCUCUGCAUUCUUCAAACAACGUUCCAGGACAUGCUCCUGGGCGCAGAUCUGUUUGAGCACCGCCUGGGCGAAUUCCAGCAAAGAGAUUUGCUCCAGUCCA---------CCAA ..((..(((.....(((((((.(((.((((((.....)))))))))......))))))))))..))((((((((((..(......)..)))))).))))....---------.... ( -32.10) >DroAna_CAF1 18920 107 - 1 UUGCUCCGCGUUCUUAAGGCACCUUUCCAGGACGUGCUCCUGGGCACAGAUCUGCUUAAGCACCGCCUGCGCGAACUCCAACAGGGAUAUCUGUUCCAGUCCG---------CCGC .......(((......((((.(((....)))..(((((..((((((......))))))))))).))))..(((.(((..((((((....))))))..))).))---------)))) ( -33.00) >DroPer_CAF1 21126 107 - 1 CCCCUCGGCAUUCUUCAGGCACCGUUCAAGCACGUGCUCUUGGGCGCAUAUCUGCUUGAGCACGGCCUGAGCGAAUUCUAGUAGUGAGAUCUGCUCUAGCCCG---------CCAA ......((((((((((((((...(((((((((.(((((....))))).....)))))))))...))))))).)))).((((.(((.......)))))))...)---------)).. ( -42.60) >consensus CUGCUCCGCAUUCUUCAGGCACCGUUCCAGGACGUGCUCCUGGGCGCAGAUCUGCUUGAGCACCGCCUGGGCGAAUUCCAGCAGUGAGAUCUGCUCCAGUCCG_________CCAA .......(.(((((((((((..(......)...((((((..(((((......))))))))))).))))))).)))).).(((((......)))))..................... (-20.84 = -20.57 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:16 2006