Locus 737

Sequence ID 3L_DroMel_CAF1
Location 2,222,922 – 2,223,025
Length 103
Max. P 0.750841
window1127

overview

Window 7

Location 2,222,922 – 2,223,025
Length 103
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 80.00
Mean single sequence MFE -23.69
Consensus MFE -12.78
Energy contribution -12.95
Covariance contribution 0.17
Combinations/Pair 1.20
Mean z-score -2.22
Structure conservation index 0.54
SVM decision value 0.47
SVM RNA-class probability 0.750841
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2222922 103 + 23771897
-------------ACAUCGGACUGAAUGUUUACCACGCCACCAGCCACAACGACAUCCUGAAUCCGAUCUACGAUGCGUAUACGCUGUACGCCAUAUACAUGUUCAUGCCGGUGCC
-------------.((((((..(((((((.((....((...((((....(((.((((..((......))...)))))))....))))...))....)).)))))))..)))))).. ( -26.20)
>DroPse_CAF1 4731 103 + 1
-------------ACAUCGGCCUGAAUGUGUACCAUGCUACCAGCCACAACUUCAUCCUGAAUCCCAUCUACGACGCCUACACCCUGUACGCCAUCUACAUGUUCAUGCCGGUGCC
-------------.(((((((.((((((((((....((.....))..............................((.(((.....))).))....)))))))))).))))))).. ( -26.30)
>DroWil_CAF1 4120 103 + 1
-------------AUAUUGGACUCAAUGUGUAUCAUGCGACGAGCAGCAACAAUAUAUUAAAUCCCAUCUAUGAUGCCUAUACCCUGUAUGCCAUCUAUAUGUUUAUGCCUGUUCC
-------------((((((....))))))............((((((((..(((((((..............((((.(.((((...))))).)))).)))))))..)).)))))). ( -15.36)
>DroMoj_CAF1 3650 116 + 1
CUCUGCCCUCCAGAUAUUGGACUGAAUGUCUAUCAUGCCACCAGCAACAAUGACAUCCUUAAUCCCAUCUAUGAUGCAUAUACUCUAUAUGCCAUCUAUAUGUUCAUGCCCAUUCC
.((((.....))))...(((.(((((((((.....(((.....))).....))))..........(((.((.((((((((((...)))))).)))))).))))))).).))).... ( -20.00)
>DroAna_CAF1 3570 103 + 1
-------------ACAUCGGCCUGAACGUCUAUCACGCCACCAGCCACAACGACAUCCUCAAUCCGAUCUACGACGCCUACACACUGUAUGCGAUCUACAUGUUCAUGCCGGUGCC
-------------.(((((((.((((((((......((.....))......)))..................(((((.(((.....))).))).)).....))))).))))))).. ( -28.00)
>DroPer_CAF1 4769 103 + 1
-------------ACAUCGGCCUGAAUGUGUACCAUGCUACCAGCCACAACUUCAUCCUGAAUCCCAUCUACGACGCCUACACCCUGUACGCCAUCUACAUGUUCAUGCCGGUGCC
-------------.(((((((.((((((((((....((.....))..............................((.(((.....))).))....)))))))))).))))))).. ( -26.30)
>consensus
_____________ACAUCGGACUGAAUGUGUACCAUGCCACCAGCCACAACGACAUCCUGAAUCCCAUCUACGACGCCUACACCCUGUACGCCAUCUACAUGUUCAUGCCGGUGCC
..............((((((..(((((((.......((.....))..............................((.(((.....))).)).......)))))))..)))))).. (-12.78 = -12.95 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:47 2006