Locus 7368

Sequence ID 3L_DroMel_CAF1
Location 19,762,327 – 19,762,429
Length 102
Max. P 0.754988
window11971

overview

Window 1

Location 19,762,327 – 19,762,429
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 91.83
Mean single sequence MFE -31.82
Consensus MFE -26.90
Energy contribution -26.99
Covariance contribution 0.09
Combinations/Pair 1.08
Mean z-score -1.87
Structure conservation index 0.85
SVM decision value 0.49
SVM RNA-class probability 0.754988
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19762327 102 - 23771897
CCCACGGCUCAUCCUUGGACGUGAUGUUCUCUUCCGACAGGAACAUGUUGUUCUCGUCCACCACGCUGGCUGUUGCAGCAGCCACAGCUGCAGUUACAUCCA
....(((((......((((((.((....(..((((....))))...)....)).))))))....(.(((((((....)))))))))))))............ ( -30.70)
>DroSec_CAF1 6975 102 - 1
CCCACGGCUCAUCCUUGGACGUGAUGUUCUCUUCCGACAGGAACAUGUUGUUCUCGUCCACCACGCUGGCUGUUGCAGCAGCCACAGCUGCAGUCACAUCCA
...............((((.(((((..........(((..((((.....))))..)))......((.((((((.((....)).)))))))).))))).)))) ( -32.00)
>DroSim_CAF1 7481 102 - 1
CCCACGGCUCAUCCUUGGACGUGAUGUUCUCUUCCGACAGGAACAUGUUGUUCUCGUCCACCACGCUGGCUGUUGCAGCAGCCACAGCUGCAGUCACAUCCA
...............((((.(((((..........(((..((((.....))))..)))......((.((((((.((....)).)))))))).))))).)))) ( -32.00)
>DroEre_CAF1 6941 102 - 1
CCCACGGCUCAUCCUUGGACGUGAUGUUCUCUUCCGAUAGGAACAUGUUGUUCUCGUCCACCACGCUGGCUGUUGCAGCAGCAACAGCUGCAGUUACAUCUA
.(((.((.....)).)))....(((((...((...((..(((((.....)))))..))......((.(((((((((....)))))))))))))..))))).. ( -33.30)
>DroYak_CAF1 6949 102 - 1
CCCACGGCUCAUCCUUGGACGUGAUGUUCUCUUCCGAUAGGAACAUGUUGUUCUCGUCCACCACGCUGGCUGUAGCAGCAGCCACAGCUGCAGUUACAUCCA
.....(((.......((((((.((....(..((((....))))...)....)).))))))....)))((.((((((.(((((....))))).)))))).)). ( -33.50)
>DroAna_CAF1 6222 99 - 1
CCCACGGUUCGUCCUUUGACGUGAUGUUCUCCUCC---AGGAACAUGUUAUUCUCGUCCACAACAUUGGCAGUUGCCGCUGCUACAGCAGCAGAAACGUCGA
.....((.....)).(((((((.(((((((.....---.)))))))....((((.............(((....)))(((((....)))))))))))))))) ( -29.40)
>consensus
CCCACGGCUCAUCCUUGGACGUGAUGUUCUCUUCCGACAGGAACAUGUUGUUCUCGUCCACCACGCUGGCUGUUGCAGCAGCCACAGCUGCAGUUACAUCCA
...((((((......((((((.((....(..((((....))))...)....)).)))))).......))))))....(((((....)))))........... (-26.90 = -26.99 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:13 2006