Locus 7366

Sequence ID 3L_DroMel_CAF1
Location 19,750,283 – 19,750,399
Length 116
Max. P 0.615141
window11969

overview

Window 9

Location 19,750,283 – 19,750,399
Length 116
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.81
Mean single sequence MFE -29.80
Consensus MFE -20.58
Energy contribution -20.72
Covariance contribution 0.14
Combinations/Pair 1.28
Mean z-score -1.09
Structure conservation index 0.69
SVM decision value 0.17
SVM RNA-class probability 0.615141
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19750283 116 + 23771897
AAGCUUCUCACAGAGAUCGACGAAAAGAUCGCGCAGCUCCCGAUUGCGAUGCAAAUUGCAGGCGAUGGUGAUCAGGGCGCGCCAGUAAGAACUGCAAAUCAAA----ACAGAUCAAUAGU
..((((((.((...((((........))))((((.((.((.(((..(.((((.........)).)).)..))).))))))))..)).))))..))........----............. ( -30.50)
>DroPse_CAF1 2161 113 + 1
CAGUUUAUCGCAUAGAUCAACAAAAAGAUCGCGCAGCUCUCGAUUGCGAUGUAGAUUACAGGCGAUUGUGAUCAGAGCGCGCCAAUACGAGCUAUCAUGCA------ACAUAUGAUUAU-
.(((((........((((........))))((((.(((((.(((..((((((.........)).))))..))))))))))))......)))))((((((..------...))))))...- ( -32.00)
>DroEre_CAF1 2488 117 + 1
AAGCUUCUCACAGAGAUCGACGAAAAGAUCGCGUAGCUCCCGAUUGCGAUGCAAAUUGCAGGCGAUUGUGAUCAGGGCCCGCCAAUAAGAACUGCAAAUCAAAUUGGGCUGGUCAAU---
...((..((((((((..((.(((.....)))))...))).((.(((((((....))))))).))..)))))..))((((.((((((..((........))..))).))).))))...--- ( -31.40)
>DroYak_CAF1 2485 117 + 1
AAGCUUUUCACAGAGAUCGACGAAAAGAUCGCGCAGCUCCCGAUUGCGAUGCAAAUUACAGGCGAUUGUGAUCAGGGCGCGCCAAUAAGAACUGCAAAUCAAAUGGUACAGGUCAAU---
..((..(((.....((((........))))((((.((.((.(((..((((((.........)).))))..))).))))))))......)))..))......................--- ( -32.00)
>DroAna_CAF1 2361 114 + 1
UAACUUUUCGCACAGAUCGACAAACAAAUCUCGUAGCUCGCGGUUUCGAUGCAAGUUGCAGGCAAUUGUGAUUAAUGCGCGCCAAUAUGAACUUGAGAAAAAACA------AUCAACAUC
....((((((((..((((.((((.....(((.((((((.(((.......))).)))))))))...))))))))..)))....(((.......))).)))))....------......... ( -19.50)
>DroPer_CAF1 2153 113 + 1
CAGUUUAUCGCAUAGAUCAACAAAAAGAUCGCGCAGCUCUCGAUUGCGAUGCAGAUUACAGGCGAUUGUGAUCAGAGCGCGCCAAUACGAGCUAUGAUGCA------ACAUAUGAUUAU-
.........((((.((((........))))((((.(((((.(((..((((((.........)).))))..))))))))))))..............)))).------............- ( -33.40)
>consensus
AAGCUUAUCACAGAGAUCGACAAAAAGAUCGCGCAGCUCCCGAUUGCGAUGCAAAUUACAGGCGAUUGUGAUCAGGGCGCGCCAAUAAGAACUGCAAAUCAAA____ACAGAUCAAUAU_
..((...((.....((((........))))((((.((((..(((..((((((.........)).))))..))).))))))))......))...))......................... (-20.58 = -20.72 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:11 2006