| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,738,539 – 19,738,659 |
| Length | 120 |
| Max. P | 0.519400 |
| Location | 19,738,539 – 19,738,659 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.42 |
| Mean single sequence MFE | -34.10 |
| Consensus MFE | -30.08 |
| Energy contribution | -28.76 |
| Covariance contribution | -1.32 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.88 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.519400 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19738539 120 - 23771897 UCAACUUCUAGGCCGAGUUCAAGGCAGGAGCAGCACAAUUCUAUCAAUGAACAUCACAACGGCAUCGGUAUUAAACUAGCGCUUGCCGGUGUUCUAUUUGGUUUAUUGGUUGUCUAUGGG ....((..((((((........)))....(((((.((((...(((((.((((((.....(((((.((.((......)).))..)))))))))))...)))))..))))))))))))..)) ( -33.10) >DroSec_CAF1 9329 120 - 1 UCAACUUCCAGGCCGAUUUCAAGGCAGGAACAGCACCGUUCCAUCAAUGAACCUCACAACAGCAUCGGUAUUAAACUAGCACUUGCCGGUGCUCUAUUUGGUUUAAUGGUUGUCUACGGG .....((((..(((........))).)))).....((((.(.((((.((((((.......((((((((((.............))))))))))......)))))).)))).)...)))). ( -37.74) >DroSim_CAF1 9362 120 - 1 UCAACUUCCAGGCCGAGUUCAAGGCAGGAACAUCACCGUUCCAUCAAUGAACCUCACAACAGCAUCGGUAUUAAACUAGCACUUGCCGGUGUUCUAUUUGGUUUAAUGGUUGUCUACGGG .....((((..(((........))).)))).....((((.(.((((.((((((.......((((((((((.............))))))))))......)))))).)))).)...)))). ( -35.34) >DroEre_CAF1 9549 120 - 1 UCAACUCCCAGGCCGAGUUCAAGGCAGGAGCAGCACUAUUCCAUGAAUGAACCUCAAAACGGCAUCGGUAUUAAAUUAGCUAUUGCCGGUGUUUUAUUCGGUUUAAUUGUUGUCUACGGG ......(((..(((........))).(((.(((((.((..((..(((((((...((...(((((..(((.........)))..))))).)).)))))))))..))..))))))))..))) ( -31.90) >DroYak_CAF1 9072 120 - 1 UCAACACCCAGGCCGAGUUCAAGGCAGGAGCAGCACCAUUCCAUCAAUGAACCUCAAAACGGCAUCGGUAUUAAAUUAGCUCUUGCCGGUGUUUUGUUCGGUUUAAUGGUUGUCUACGGG ......(((..(((........))).((((........))))((((.((((((.((((...(((((((((.............)))))))))))))...)))))).)))).......))) ( -32.42) >consensus UCAACUUCCAGGCCGAGUUCAAGGCAGGAGCAGCACCAUUCCAUCAAUGAACCUCACAACGGCAUCGGUAUUAAACUAGCACUUGCCGGUGUUCUAUUUGGUUUAAUGGUUGUCUACGGG ......(((..(((........))).((((........))))((((.((((((.......((((((((((.............))))))))))......)))))).)))).......))) (-30.08 = -28.76 + -1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:07 2006