| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,737,970 – 19,738,085 |
| Length | 115 |
| Max. P | 0.628633 |
| Location | 19,737,970 – 19,738,085 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 82.96 |
| Mean single sequence MFE | -38.43 |
| Consensus MFE | -27.98 |
| Energy contribution | -29.15 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.628633 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19737970 115 + 23771897 GGUUGUGUUGAAUGUUCGAAGGGAGAGGAAGAUGACUGCAUCCUCCACCAGAGGGCUGUAGGUAUCGCAGAUUGUGUGCAGGGCUCGAGCUCCAUUCGGCGCAAUCUGUAAUAAG (((((((((((((((((....)))(((...((((.((((((((((.....))))).))))).))))((...(((....))).)).....)))))))))))))))))......... ( -40.70) >DroSec_CAF1 8759 115 + 1 GGUUGUGUUGAAUGUUCGAAGGGAAAGGAAGAUGACUGCAUCCUCCACCAGAGGGCUGUAGGUAUCACAGAUUGUGUGCAGGGCUCGGGCUCCAUUCGGCGCAAUCUGUAAUAGG (((((((((((((((((....)))..(((.((((....)))).))).((...(((((....(((.(((.....))))))..))))).))...))))))))))))))......... ( -40.00) >DroSim_CAF1 8793 115 + 1 GGUUGUGUUGAAUGUUCGAAGGGAAAGGAAGAUGACUGCAUCCUCCACCAGAGGGCUGUAGGUAUCGCAGAUUGUGUGCAGGGCUCGGGCUCCAUUCGGCGCAAUCUGUAAUAAG (((((((((((((((((....)))......((((.((((((((((.....))))).))))).))))(((.......))).((((....))))))))))))))))))......... ( -40.50) >DroEre_CAF1 8981 115 + 1 GGUUGUGUUGAAUGUUCGAAGAGUAAGGAAGAUGACUGCAUCUUUUACAAGAGGGCUGUAUGUAUCGCAAAUUGUGUGCAGAGCUCGGGCUCCAUUCGGCGCAAUCUGUAAUCAA ((((((((((((((......((((..((((((((....))))))))....(((..(((((..((........))..)))))..)))..))))))))))))))))))......... ( -40.00) >DroYak_CAF1 8510 115 + 1 AGUUGUGUUGAAUGUUUGAAGAGUAAGGAAGAUGACUGCAUCAUUUACAAGAGGGCUGUAUGUAUCGCAGAUUGUGUGCAGAGCUCGGGCUCCAUUCGGCGCGAUCUGUAAUCGA .(((((((((((((........(((((...((((....)))).)))))..(((..(((((..((........))..)))))..)))......))))))))))))).......... ( -33.90) >DroMoj_CAF1 9455 115 + 1 UGUCGUCAGAUGAGUGCGCAGUGUCAGAAAGAUGACAACAUCCGGAGCGAUAGGACUGUAGGUGUCGCAAAUGGUGUGCAGUGCACGUGCCGCAUUUGGAGGUAUCUGUGAUUGA .((((.(((((..((((((..(((((......)))))(((.(((..((((((...(....).))))))...))))))...))))))..(((.(.....).))))))))))))... ( -35.50) >consensus GGUUGUGUUGAAUGUUCGAAGGGAAAGGAAGAUGACUGCAUCCUCCACCAGAGGGCUGUAGGUAUCGCAGAUUGUGUGCAGGGCUCGGGCUCCAUUCGGCGCAAUCUGUAAUAAA ((((((((((((((................((((.((((((((((.....))))).))))).))))(((.......))).((((....))))))))))))))))))......... (-27.98 = -29.15 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:05 2006