Locus 7360

Sequence ID 3L_DroMel_CAF1
Location 19,727,129 – 19,727,245
Length 116
Max. P 0.993534
window11959

overview

Window 9

Location 19,727,129 – 19,727,245
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.20
Mean single sequence MFE -41.04
Consensus MFE -34.40
Energy contribution -34.32
Covariance contribution -0.08
Combinations/Pair 1.09
Mean z-score -2.31
Structure conservation index 0.84
SVM decision value 2.41
SVM RNA-class probability 0.993534
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19727129 116 + 23771897
UUUUGCCAUUGCGAUCGUGUGGGUGCCGCUACUU-UGUGUGUGUGCAU--UUGUGUCUGCGUUUUCGAAAGAGCA-AUUCAGAACGCAAUUAACACUGACGGCGCCCAUGCUGGUUAUCA
....((....))((((((((((((((((..((..-...))((((....--(((((((((.((((((....))).)-)).))).))))))...))))...)))))))))))).)))).... ( -42.80)
>DroSec_CAF1 36757 116 + 1
UUUUGCUAUUGCGAUCGUGUGGGUGCCGCUACUU-UGUGUGUGUGCGU--UUGUGUCUGCGUUUUCGAAAGAGCA-AUUCAGAACGCAAUUAACACUGACGGUGCCCAUGCUGGUUAUCA
....((....))(((((((((((..((((.....-.((((...(((((--.....((((.((((((....))).)-)).)))))))))....)))).).)))..))))))).)))).... ( -41.60)
>DroSim_CAF1 38942 116 + 1
UUUUGCCAUUGCGAUCGUGUGGGUGCCGCUACUU-UGUGUGUGUGCGU--UUGUGUCUGCGUUUUCGAAAGAGCA-AUUCAGAACGCAAUUAACACUGACGGCGCCCAUGCUGGUUAUCA
....((....))(((((((((((((((((.....-.((((...(((((--.....((((.((((((....))).)-)).)))))))))....)))).).)))))))))))).)))).... ( -42.80)
>DroEre_CAF1 39902 120 + 1
AUUUGCCACUGCGAUCGUGUGGGUGCCGCUACUUUUGUGUGUGUAUGUAUUUGUGUCUGCGUUUUGGGAAGAGCAAAUUCAGAACGCAAUUGACACCGACGGCUCCCAUGCAGGCUGUCA
....(((...(....)(((((((.((((((((......))).))..((....((((((((((((((((.........)))))))))))...)))))..))))).))))))).)))..... ( -38.50)
>DroYak_CAF1 37837 117 + 1
UUUUGCCAUUGCGAUCGUGUGGGUGCCGAUACUUUUGUGUCUGUGUGUA--UGUGUCUGCGUUUUCGAAAGAGCA-AUUCAGAACGCAAUUAACGCUGACGACGCCCAUGCUGGCUAUCA
....((((........(((((((((.((((((....))))).((((...--((((((((.((((((....))).)-)).))).)))))....))))....).)))))))))))))..... ( -39.50)
>consensus
UUUUGCCAUUGCGAUCGUGUGGGUGCCGCUACUU_UGUGUGUGUGCGU__UUGUGUCUGCGUUUUCGAAAGAGCA_AUUCAGAACGCAAUUAACACUGACGGCGCCCAUGCUGGUUAUCA
..((((....))))..((((((((((((.(((....))).............((((.((((((((.(((........)))))))))))....))))...))))))))))))......... (-34.40 = -34.32 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:01 2006